PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0540.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 371aa    MW: 41162.7 Da    PI: 8.7766
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0540.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.81.8e-3173126255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m++k+L+++hvkSHLQ+YR+
  SapurV1A.0061s0540.2.p  73 PRLRWTPDLHLCFVHAVERLGGQERATPKLVLQMMNIKDLSIAHVKSHLQMYRS 126
                             8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-3069128IPR009057Homeodomain-like
SuperFamilySSF466891.79E-1471128IPR009057Homeodomain-like
TIGRFAMsTIGR015574.4E-2273126IPR006447Myb domain, plants
PfamPF002497.9E-974125IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEGSDSFEGS KSSYSNKDVE QDEAGGEDDE VNNKISFKSR NEGESTSNSS VEENGKKATS  60
TGSVRQYVRS KMPRLRWTPD LHLCFVHAVE RLGGQERATP KLVLQMMNIK DLSIAHVKSH  120
LQMYRSMRND EPNQGQGLCF EGGDHQIYNL SQLPILQNFN QRSSCNLRFG DASWRGDHDR  180
QMYSPYTGGT GLNRFKHGLY GSVSERLVTG RNNHNSLNSG SSINIPSLNV QAATSRTHQF  240
LEGVRLFQVS RQNESRPGSM ESNFIAKLQE RSSGIDQKEC SNTTSSANKN WRTIQEMQKG  300
LKRKTLDSDC NLDLNLSLKL APKDDDRLQK CVVDGSLSPP LSSSSSSKLG TSMEGGRKHA  360
RMASTLDLTL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1774128357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0540.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035900.10.0PREDICTED: putative two-component response regulator ARR21
TrEMBLB9HHT81e-176B9HHT8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19310.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.11e-54G2-like family protein