PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0540.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 389aa    MW: 43015 Da    PI: 9.0184
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like383.7e-127398227
                 G2-like  2 prlrWtpeLHerFveaveqLGGsekA 27
                            prlrWtp+LH +Fv+ave+LGG+ek 
  SapurV1A.0061s0540.1.p 73 PRLRWTPDLHLCFVHAVERLGGQEKN 98
                            8**********************986 PP
2G2-like45.51.7e-141161442755
                 G2-like  27 AtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             AtPk +l++m++k+L+++hvkSHLQ+YR+
  SapurV1A.0061s0540.1.p 116 ATPKLVLQMMNIKDLSIAHVKSHLQMYRS 144
                             9***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-2769146IPR009057Homeodomain-like
SuperFamilySSF466893.05E-1171147IPR009057Homeodomain-like
PfamPF002494.4E-774143IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.5E-9115145IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MEGSDSFEGS KSSYSNKDVE QDEAGGEDDE VNNKISFKSR NEGESTSNSS VEENGKKATS  60
TGSVRQYVRS KMPRLRWTPD LHLCFVHAVE RLGGQEKNSM RNLLLTVAIV LICAGATPKL  120
VLQMMNIKDL SIAHVKSHLQ MYRSKRNDEP NQGQGLCFEG GDHQIYNLSQ LPILQNFNQR  180
SSCNLRFGDA SWRGDHDRQM YSPYTGGTGL NRFKHGLYGS VSERLVTGRN NHNSLNSGSS  240
INIPSLNVQA ATSRTHQFLE GVRLFQVSRQ NESRPGSMES NFIAKLQERS SGIDQKECSN  300
TTSSANKNWR TIQEMQKGLK RKTLDSDCNL DLNLSLKLAP KDDDRLQKCV VDGSLSPPLS  360
SSSSSKLGTS MEGGRKHARM ASTLDLTL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00301DAPTransfer from AT2G40260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035900.10.0PREDICTED: putative two-component response regulator ARR21
TrEMBLB9HHT81e-172B9HHT8_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23783482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.18e-51G2-like family protein