PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0061s0270.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-X1
Protein Properties Length: 873aa    MW: 97486.9 Da    PI: 8.4043
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0061s0270.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X116.12.5e-05196214120
                zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                             CG H C  lCH+GpCp+Cp+
  SapurV1A.0061s0270.2.p 196 CG-HFCLLLCHPGPCPSCPK 214
                             **.***************96 PP
2zf-NF-X121.83.9e-07248265118
                zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                             CG H+C+++CH GpCppC
  SapurV1A.0061s0270.2.p 248 CGTHSCKQICHDGPCPPC 265
                             ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.94E-581164No hitNo description
PROSITE patternPS01359084150IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.84584151IPR001841Zinc finger, RING-type
CDDcd060083.08E-6184232No hitNo description
PfamPF014220.0028196213IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0049196214IPR000967Zinc finger, NF-X1-type
CDDcd060083.50E-9238286No hitNo description
PfamPF014222.5E-5248265IPR000967Zinc finger, NF-X1-type
SMARTSM004383.0E-4248267IPR000967Zinc finger, NF-X1-type
CDDcd060081.31E-8291334No hitNo description
PfamPF014220.08301319IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0013301320IPR000967Zinc finger, NF-X1-type
CDDcd060087.59E-9345394No hitNo description
PfamPF014220.028355374IPR000967Zinc finger, NF-X1-type
SMARTSM004380.35355375IPR000967Zinc finger, NF-X1-type
CDDcd060089.34E-8398446No hitNo description
PfamPF014220.0054408425IPR000967Zinc finger, NF-X1-type
SMARTSM004380.15408427IPR000967Zinc finger, NF-X1-type
CDDcd060081.02E-9425473No hitNo description
PfamPF014220.0036429453IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0097435454IPR000967Zinc finger, NF-X1-type
SMARTSM0043848492513IPR000967Zinc finger, NF-X1-type
PfamPF014224.8502512IPR000967Zinc finger, NF-X1-type
PfamPF0142213603623IPR000967Zinc finger, NF-X1-type
SMARTSM004383.6603625IPR000967Zinc finger, NF-X1-type
CDDcd060081.59E-4623664No hitNo description
SMARTSM004380.0032635653IPR000967Zinc finger, NF-X1-type
PfamPF014220.023636652IPR000967Zinc finger, NF-X1-type
SMARTSM004381.9698719IPR000967Zinc finger, NF-X1-type
PfamPF0142211699712IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 873 aa     Download sequence    Send to blast
MSTTPSHHHL QQLQRKKSVS DSDYDSDYDS DTTNSQNHHS ADLTNSIFKS YFEHTNLHSS  60
QPTQHDLTKI KSFLTSSSSG ALSCLICLER IKTSDPTWSC TSLCYAVFHL ICIQSWARQA  120
SDLSALRAST RLPISSDKAA ESSTWNCPKC RSDYSRSEIP RNYLCLCGKV ENPPSDPWIL  180
PHSCGEVCDR QLKNNCGHFC LLLCHPGPCP SCPKLVKTTC FCGKTTDVKR CGYKLFSCNN  240
ICNKSLDCGT HSCKQICHDG PCPPCNARGD YKCSCGRKVE ERECCKREFR CENPCEKLLA  300
CGKHVCERGC HFGECGDCPL QGKRACPCGK RLYEGMACDI AVPLCGGTCD KMLSCGFHRC  360
HERCHRGPCM ETCRIVVTKL CRCGGMKKEV PCYQDLACER KCQRMRDCGR HACKRRCCDG  420
DCPPCGEICG KRLRCNNHKC PAPCHRGACS PCPVMFTISC ACGGAHFEVP CGTEMDQKPP  480
KCRKSCGISP LCRHGSDSKP HKCHYGACPP CRLLCDEEYP CSHKCKLRCH GPRPPPNPDF  540
ILKPKKKKPN HPSESTPGSP CPPCPELVWR PCLGQHIGAE RMMVCSNRTQ FSCENLCGSP  600
LSCGNHYCTK TCHALKSQSC EECHLPCEKE RKPSCRHSCP LPCHPGDCPP CKVLVKRSCH  660
CGSMVHVFEC IYYNNLSEKE QTAARSCGGS CHRKLPNCTH LCPKICHPGQ CPSPDKCTKK  720
VTIRCQCQTL KKEMPCQEVQ AAYHKAGSNP KDVSKSHFGL GLLPCNSGCK SKAQVVDQEL  780
HLRKSKDLEE KVPSTEIHIP KRRKRRERLQ ETKKSSPLQK IAATMKWLLV TVTLVVALMA  840
AAYFGYKGLM WLSDWMNEVE EQQRHRRRHP RI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1799805PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0061s0270.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6265000.0HQ626500.1 Salix schwerinii isolate X-27B_S10_B genomic sequence.
GenBankHQ6279010.0HQ627901.1 Salix viminalis isolate X-27B_V56_A genomic sequence.
GenBankHQ6279020.0HQ627902.1 Salix viminalis isolate X-27B_V56_B genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316211.10.0NF-X1-type zinc finger protein NFXL2 isoform X1
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLB9HSN70.0B9HSN7_POPTR; NF-X1 family protein
STRINGPOPTR_0010s19600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors