PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0060s0130.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CAMTA

Protein Properties

Length: 875aa MW: 98617.8 Da PI: 8.0598

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0060s0130.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	158.3	1.5e-49	30	145	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwl+++ei+a+L n++ +++ ++ + p g++iL++rk++r+frkDG++wkkk dgktv+E+he+LKvg e +++yYah+ SapurV1A.0060s0130.3.p 30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVNLPIGGTIILFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGDEERIHVYYAHG 116 4459********************************************************************************* PP CG-1 89 eenptfqrrcywlLeeelekivlvhylev 117 ++nptf rrcywlL+++le+ivlvhy+e+ SapurV1A.0060s0130.3.p 117 QDNPTFVRRCYWLLDKTLEHIVLVHYRET 145 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.123	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.4E-71	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.0E-44	32	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	6.6E-4	320	418	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	1.0E-5	328	414	IPR002909	IPT domain
SuperFamily	SSF81296	6.44E-12	328	414	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.95E-15	513	623	No hit	No description
SuperFamily	SSF48403	2.8E-16	514	626	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-6	515	593	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.8E-15	520	626	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.61	531	623	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	5.6E-6	564	593	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.381	564	596	IPR002110	Ankyrin repeat
SMART	SM00015	35	727	749	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.888	728	754	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0013	750	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	751	775	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.7E-4	752	772	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	19	830	852	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.059	832	860	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MESSFLDGLV GSEIHGFHTL RDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN 60 LPIGGTIILF DRKMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGDEERIH VYYAHGQDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETRELQG SPATPVNSHS SSVSDQSGPW LLSEESDSGA 180 AHAYYAGKKD LELSGSSDSS TVINHEIRLH DLNTLEWDEL LTNDPSNSIL PGEDKIPSFD 240 QQNQIAVNGP VNDRGTLLGY QLSAEMSALG NLTESVVRSD NTHFSGLDNV HRQLTGSRVY 300 SDAQRKNSVV LSAGMDQHQS SVQEQMFTIT DFSPAWGFSN QTTKILVTGY FHEQYLHLAK 360 SKLFCICGDA FVLAEVVQAG VYSCMVLPHS PGLVNLCLSL DGSKPISQIL SFEYLAPPVH 420 DSVVLSEEKS RWEEFHLQMR LTYLLSSTSK TLNALSSKVS PAKLKEAKKF ANKTSNISNT 480 WAHLIKSIEG SRISVAQAKD GLFELSLRNA IKEWLLERIL EGCKTTEYDA QGLGVIHLCA 540 IMGYTWSAYL FSWSGLSLDF RDKHGWTAIH WAAYYGREKM VAALLSAGAK PNLVTDPTKE 600 NPSGCTAADL ASAKGYDGLA AYLSEKALVA QFESMIIAGN ATGSLQMTAT DTLNSENLSE 660 EELHLKDALA AYRTAAGAAA RIQVAFREHS LKVHTKAVQS SSPEDEARNI IAAMKIQHAF 720 RNYESKKKMA AAAHIQHRFR TWKTRREFLN MRRHAIRIQA VFRGFQARKQ YRKVIWSVGV 780 LEKAILRWRF KRKGFRGLQV EPVETYGDPK HESDTEEDFY KISQKQAEER VERSVIRVQA 840 MFRSKQAQEQ YRRMKLTHNQ AMVEYEGLLD TDMV*

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MESSFLDGLV GSEIHGFHTL RDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN  60
LPIGGTIILF DRKMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGDEERIH VYYAHGQDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETRELQG SPATPVNSHS SSVSDQSGPW LLSEESDSGA  180
AHAYYAGKKD LELSGSSDSS TVINHEIRLH DLNTLEWDEL LTNDPSNSIL PGEDKIPSFD  240
QQNQIAVNGP VNDRGTLLGY QLSAEMSALG NLTESVVRSD NTHFSGLDNV HRQLTGSRVY  300
SDAQRKNSVV LSAGMDQHQS SVQEQMFTIT DFSPAWGFSN QTTKILVTGY FHEQYLHLAK  360
SKLFCICGDA FVLAEVVQAG VYSCMVLPHS PGLVNLCLSL DGSKPISQIL SFEYLAPPVH  420
DSVVLSEEKS RWEEFHLQMR LTYLLSSTSK TLNALSSKVS PAKLKEAKKF ANKTSNISNT  480
WAHLIKSIEG SRISVAQAKD GLFELSLRNA IKEWLLERIL EGCKTTEYDA QGLGVIHLCA  540
IMGYTWSAYL FSWSGLSLDF RDKHGWTAIH WAAYYGREKM VAALLSAGAK PNLVTDPTKE  600
NPSGCTAADL ASAKGYDGLA AYLSEKALVA QFESMIIAGN ATGSLQMTAT DTLNSENLSE  660
EELHLKDALA AYRTAAGAAA RIQVAFREHS LKVHTKAVQS SSPEDEARNI IAAMKIQHAF  720
RNYESKKKMA AAAHIQHRFR TWKTRREFLN MRRHAIRIQA VFRGFQARKQ YRKVIWSVGV  780
LEKAILRWRF KRKGFRGLQV EPVETYGDPK HESDTEEDFY KISQKQAEER VERSVIRVQA  840
MFRSKQAQEQ YRRMKLTHNQ AMVEYEGLLD TDMV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0060s0130.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	0.0	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462496.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_024462497.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3N7FIW0	0.0	A0A3N7FIW0_POPTR; Uncharacterized protein
STRING	POPTR_0010s15160.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	SapurV1A.0060s0130.3.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]