PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0060s0130.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CAMTA

Protein Properties

Length: 927aa MW: 104025 Da PI: 7.1072

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0060s0130.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	158.2	1.7e-49	30	145	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwl+++ei+a+L n++ +++ ++ + p g++iL++rk++r+frkDG++wkkk dgktv+E+he+LKvg e +++yYah+ SapurV1A.0060s0130.1.p 30 EEsRTRWLRPNEIHAMLCNHKYFTINVKPVNLPIGGTIILFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGDEERIHVYYAHG 116 4459********************************************************************************* PP CG-1 89 eenptfqrrcywlLeeelekivlvhylev 117 ++nptf rrcywlL+++le+ivlvhy+e+ SapurV1A.0060s0130.1.p 117 QDNPTFVRRCYWLLDKTLEHIVLVHYRET 145 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	74.123	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.4E-71	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	6.5E-44	32	144	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	7.5E-4	376	470	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	7.0E-12	380	466	IPR014756	Immunoglobulin E-set
Pfam	PF01833	1.1E-5	380	466	IPR002909	IPT domain
CDD	cd00204	4.83E-15	565	675	No hit	No description
SuperFamily	SSF48403	3.11E-16	566	678	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.1E-6	567	645	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.9E-15	572	678	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.61	583	675	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.381	616	648	IPR002110	Ankyrin repeat
SMART	SM00248	5.6E-6	616	645	IPR002110	Ankyrin repeat
SMART	SM00015	35	779	801	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.888	780	806	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0013	802	824	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	803	827	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	5.1E-4	804	824	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	19	882	904	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.059	884	912	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MESSFLDGLV GSEIHGFHTL RDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN 60 LPIGGTIILF DRKMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGDEERIH VYYAHGQDNP 120 TFVRRCYWLL DKTLEHIVLV HYRETRELQG SPATPVNSHS SSVSDQSGPW LLSEESDSGA 180 AHAYYAGKKD LELSGSSDSS TVINHEIRLH DLNTLEWDEL LTNDPSNSIL PGEDKIPSFD 240 QQNQIAVNGP VNDRGTLLGY QLSAEMSALG NLTESVVRSD NTHFSGLDNV HRQLTGSRVY 300 SDAQRKNSVV LSAGDSLDIL INDGLQSQDS FGRWVNSIID DSPGSVDDAA LESSISSSHD 360 SFASPGMDQH QSSVQEQMFT ITDFSPAWGF SNQTTKILVT GYFHEQYLHL AKSKLFCICG 420 DAFVLAEVVQ AGVYSCMVLP HSPGLVNLCL SLDGSKPISQ ILSFEYLAPP VHDSVVLSEE 480 KSRWEEFHLQ MRLTYLLSST SKTLNALSSK VSPAKLKEAK KFANKTSNIS NTWAHLIKSI 540 EGSRISVAQA KDGLFELSLR NAIKEWLLER ILEGCKTTEY DAQGLGVIHL CAIMGYTWSA 600 YLFSWSGLSL DFRDKHGWTA IHWAAYYGRE KMVAALLSAG AKPNLVTDPT KENPSGCTAA 660 DLASAKGYDG LAAYLSEKAL VAQFESMIIA GNATGSLQMT ATDTLNSENL SEEELHLKDA 720 LAAYRTAAGA AARIQVAFRE HSLKVHTKAV QSSSPEDEAR NIIAAMKIQH AFRNYESKKK 780 MAAAAHIQHR FRTWKTRREF LNMRRHAIRI QAVFRGFQAR KQYRKVIWSV GVLEKAILRW 840 RFKRKGFRGL QVEPVETYGD PKHESDTEED FYKISQKQAE ERVERSVIRV QAMFRSKQAQ 900 EQYRRMKLTH NQAMVEYEGL LDTDMV*

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MESSFLDGLV GSEIHGFHTL RDLDVPSIME ESRTRWLRPN EIHAMLCNHK YFTINVKPVN  60
LPIGGTIILF DRKMLRNFRK DGHNWKKKND GKTVKEAHEH LKVGDEERIH VYYAHGQDNP  120
TFVRRCYWLL DKTLEHIVLV HYRETRELQG SPATPVNSHS SSVSDQSGPW LLSEESDSGA  180
AHAYYAGKKD LELSGSSDSS TVINHEIRLH DLNTLEWDEL LTNDPSNSIL PGEDKIPSFD  240
QQNQIAVNGP VNDRGTLLGY QLSAEMSALG NLTESVVRSD NTHFSGLDNV HRQLTGSRVY  300
SDAQRKNSVV LSAGDSLDIL INDGLQSQDS FGRWVNSIID DSPGSVDDAA LESSISSSHD  360
SFASPGMDQH QSSVQEQMFT ITDFSPAWGF SNQTTKILVT GYFHEQYLHL AKSKLFCICG  420
DAFVLAEVVQ AGVYSCMVLP HSPGLVNLCL SLDGSKPISQ ILSFEYLAPP VHDSVVLSEE  480
KSRWEEFHLQ MRLTYLLSST SKTLNALSSK VSPAKLKEAK KFANKTSNIS NTWAHLIKSI  540
EGSRISVAQA KDGLFELSLR NAIKEWLLER ILEGCKTTEY DAQGLGVIHL CAIMGYTWSA  600
YLFSWSGLSL DFRDKHGWTA IHWAAYYGRE KMVAALLSAG AKPNLVTDPT KENPSGCTAA  660
DLASAKGYDG LAAYLSEKAL VAQFESMIIA GNATGSLQMT ATDTLNSENL SEEELHLKDA  720
LAAYRTAAGA AARIQVAFRE HSLKVHTKAV QSSSPEDEAR NIIAAMKIQH AFRNYESKKK  780
MAAAAHIQHR FRTWKTRREF LNMRRHAIRI QAVFRGFQAR KQYRKVIWSV GVLEKAILRW  840
RFKRKGFRGL QVEPVETYGD PKHESDTEED FYKISQKQAE ERVERSVIRV QAMFRSKQAQ  900
EQYRRMKLTH NQAMVEYEGL LDTDMV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0060s0130.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	0.0	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462496.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_024462497.1	0.0	calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A3N7FIW0	0.0	A0A3N7FIW0_POPTR; Uncharacterized protein
STRING	POPTR_0010s15160.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	SapurV1A.0060s0130.1.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]