PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0059s0650.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24979.7 Da PI: 5.0759 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.7 | 2.1e-16 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+ r++lg+f++ +Aa+ ++ a+ k++g SapurV1A.0059s0650.1.p 109 HYRGVRRRP-WGKFAAEIRDPTRK--GSRVWLGTFDSDVDAARSYDCAAFKMRG 159 7********.**********8542..4**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.4E-30 | 108 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 109 | 168 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 24.065 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-36 | 109 | 173 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.0E-12 | 109 | 159 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.92E-29 | 109 | 167 | No hit | No description |
PRINTS | PR00367 | 2.0E-12 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MATPEESSTL ELIRQHLLGD FTSTDEFISN LESRIASVSV KLESSLSGSE SNSPISDQSY 60 HSTQEIYSFE IKPEIVDLTP PEPMLSSSSN QYAPPEPVKM TDKGEAVRHY RGVRRRPWGK 120 FAAEIRDPTR KGSRVWLGTF DSDVDAARSY DCAAFKMRGR KAILNFPLEA GLSRPPPATS 180 RKRRRSKREE VQPESVEVST ENWNIKWSGE EEGVSDEEQL SP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-26 | 108 | 168 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 184 | RKRRR |
2 | 180 | 185 | RKRRRS |
3 | 180 | 187 | RKRRRSKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0059s0650.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022363.1 | 1e-145 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
Swissprot | Q9LY05 | 1e-48 | EF106_ARATH; Ethylene-responsive transcription factor ERF106 | ||||
TrEMBL | B9NBR0 | 1e-142 | B9NBR0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s15060.1 | 1e-142 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0059s0650.1.p |
Publications ? help Back to Top | |||
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