PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0059s0450.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRF | ||||||||
Protein Properties | Length: 384aa MW: 42232 Da PI: 8.364 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.8 | 4.6e-24 | 80 | 124 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+ep+rC+RtDGKkWRCsr+v +++k+CErH h++r rsrk++e+ SapurV1A.0059s0450.2.p 80 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHSHKSRPRSRKPVES 124 79****************************************986 PP | |||||||
2 | QLQ | 52.4 | 1.6e-18 | 17 | 52 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FTaaQlq+L++Q ++yKy++a++ vPpeLl++i+k SapurV1A.0059s0450.2.p 17 LFTAAQLQELERQTTIYKYMVASAAVPPELLMPITK 52 5*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-10 | 16 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.706 | 17 | 52 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.3E-13 | 18 | 50 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 26.1 | 80 | 124 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.1E-19 | 81 | 123 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MVTTHSGEMT SVNERVLFTA AQLQELERQT TIYKYMVASA AVPPELLMPI TKNQSNVLTS 60 QSNMLTGSLG LVIPSCNSPD PEPWRCKRTD GKKWRCSRDV APDQKYCERH SHKSRPRSRK 120 PVESNTHDFP RSMTSTINNN YSTNTQLFNK KPHFPRNLYM FPGVMASSVT SYDQPRELGK 180 ALERRDFTCF YNSSQEWQHL TRDVIKGYHN VNDIDRESVH SLQSQRLNDH CSMFLSPKST 240 ALDRALNHSQ TQAQVTWHFI DACPANSGRD NICKNTHVSS SETSALPHSA LTLSMSSGSQ 300 SETSNEGNGS AQLGSSGIVG TTDRDHQSVN GLIRPQWTMT HGGSWPGGPL AEALCLGISG 360 HAKTASNLAS PCSSSCGPSA DKN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0059s0450.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ108541 | 3e-31 | DQ108541.1 Corchorus olitorius SSR marker J142-M13F genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464387.1 | 1e-173 | growth-regulating factor 8 isoform X1 | ||||
TrEMBL | A0A3N7FAP6 | 1e-172 | A0A3N7FAP6_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11480.1 | 1e-168 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24150.1 | 1e-33 | growth-regulating factor 8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0059s0450.2.p |