PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0058s0610.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 308aa    MW: 33259.6 Da    PI: 6.6279
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0058s0610.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like109.51.7e-343892155
                 G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            kprlrWt+eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl
  SapurV1A.0058s0610.1.p 38 KPRLRWTTELHERFVDAVAQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 92
                            79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.2573595IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-333593IPR009057Homeodomain-like
SuperFamilySSF466891.97E-173795IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-243893IPR006447Myb domain, plants
PfamPF002491.9E-94091IPR001005SANT/Myb domain
PfamPF143794.5E-26139185IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYSAIHSLPL DGHGDFQAAL DGTNLPGDAC LVLTTDPKPR LRWTTELHER FVDAVAQLGG  60
PDKATPKTIM RTMGVKGLTL YHLKSHLQKY RLGKQSCKES TDNSKDVGIA ASVAESQDTG  120
SSTSAPSRMI AQDLNDGYQV TEALRVQMEV QRRLHEQLEV QRRLQLRIES QGKYLQSILE  180
KACKALNDQA AATAGLEAAR EELSELAIKV YNERAGNAPL DTMKMPSISE LAAAFENKHA  240
PNVPARIGDC SVESCLTSTG SPVSPMGVGS QVASTKKRSR PLFGNGDSLP LDGNIQQEVE  300
WTMSNVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-193894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-193894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-193894157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-193894157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
UniProtTranscriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0058s0610.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468170.0EF146817.1 Populus trichocarpa clone WS01214_H04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369801.10.0protein PHR1-LIKE 3
SwissprotQ8LAJ71e-134PHL3_ARATH; Protein PHR1-LIKE 3
SwissprotQ94A571e-134PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLU5GS230.0U5GS23_POPTR; Uncharacterized protein
STRINGXP_002518104.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13640.11e-123G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]