PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0058s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HSF

Protein Properties

Length: 487aa MW: 54291.1 Da PI: 6.4527

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0058s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.8	8.5e-34	22	112	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl k+y++++d++++e++sws+n+nsfvv+++ e+a+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+ weF ++ F k SapurV1A.0058s0140.1.p 22 FLIKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPELARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFGNEDFVK 99 9**************************************************************999.........****** PP XXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkk 101 ++k+ll++i+r+k SapurV1A.0058s0140.1.p 100 DQKHLLKNIHRRK 112 *********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	5.65E-35	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.0E-36	18	111	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-57	18	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	9.5E-30	22	111	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	22	45	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	60	72	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	61	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.5E-18	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MEPGPSSATS GGGGGGGGPA PFLIKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPELARLL 60 LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFGNEDFVKD QKHLLKNIHR RKPIHSHSQP 120 QGSLVDPERA AYEKEIDKLS RDKAKLQACI QGFEQQRSSA KLQVEDLTRK IDIMQQRQEK 180 LLSFLEKSVQ NPTFVEHLAR KIEALDFSAY SKKRRLPQVD HSMPIAENSL VENHSSSRPV 240 SNVIHQDFSD KLRLELSPAV SDINLVSQSS NEDGGSPRRK ISEGDLKDAL TRTSGLQVAP 300 ETWELSDTGA SYTFKVNPAV PRDIPANGSP ALHSRQANLT CNEEGDGHIS CQLNLSLASS 360 PLQVNKNPYS ARIPQLGQEI GKSPESRFNE SNKDSDMRAT QNNTNQGSEG RTLSSPQENP 420 NNNQAPASAP VTVNDVFWEQ FLTERPGYSD NEEASSNYRA NPYDERERRI GFGVPRNAKN 480 MEQLSL*

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MEPGPSSATS GGGGGGGGPA PFLIKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPELARLL  60
LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFGNEDFVKD QKHLLKNIHR RKPIHSHSQP  120
QGSLVDPERA AYEKEIDKLS RDKAKLQACI QGFEQQRSSA KLQVEDLTRK IDIMQQRQEK  180
LLSFLEKSVQ NPTFVEHLAR KIEALDFSAY SKKRRLPQVD HSMPIAENSL VENHSSSRPV  240
SNVIHQDFSD KLRLELSPAV SDINLVSQSS NEDGGSPRRK ISEGDLKDAL TRTSGLQVAP  300
ETWELSDTGA SYTFKVNPAV PRDIPANGSP ALHSRQANLT CNEEGDGHIS CQLNLSLASS  360
PLQVNKNPYS ARIPQLGQEI GKSPESRFNE SNKDSDMRAT QNNTNQGSEG RTLSSPQENP  420
NNNQAPASAP VTVNDVFWEQ FLTERPGYSD NEEASSNYRA NPYDERERRI GFGVPRNAKN  480
MEQLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-20	13	111	17	129	Heat shock factor protein 1
5d5v_B	2e-20	13	111	17	129	Heat shock factor protein 1
5d5v_D	2e-20	13	111	17	129	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0058s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP013984	0.0	KP013984.1 Populus simonii heat shock transcription factor A5b (HsfA5b) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002298675.2	0.0	heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-167	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	B9GFJ0	0.0	B9GFJ0_POPTR; Uncharacterized protein
STRING	POPTR_0001s32810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-165	HSF family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0058s0140.1.p

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]