PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0056s0240.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | SBP | ||||||||
Protein Properties | Length: 475aa MW: 52518.2 Da PI: 8.8927 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.2 | 1.4e-39 | 184 | 260 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk++ SapurV1A.0056s0240.3.p 184 RCQVQDCNLDLSSAKDYHRKHRVCESHSKCPKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQS 260 6**************************************************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.5E-32 | 177 | 246 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.129 | 182 | 259 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.19E-37 | 183 | 264 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-30 | 185 | 258 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLTD LEADGEKGND SGFFYSSGSA 60 SRSRGSISDL ELASFSKSAS TNSSSAGEVK TSNFTLEASK INPSDYNKEE LVKAKVTGTS 120 PTLEASVGSG DQLLGLKLGK RTYFEDACAG SNAQSSAVST IHVPSSFTPA KKLKSGNHSQ 180 RAPRCQVQDC NLDLSSAKDY HRKHRVCESH SKCPKVIVAG LERRFCQQCS RFHGLSEFDE 240 KKKSCRRRLS DHNARRRKQS GSVHLNPSRL SSSLYDERQQ MSHVWDKAPL VHSRPNANLT 300 WESTSASKFT ITKEYIAKPA EIGGSDRRFH MPGIDLTNSN AIQHHHKSNG FLPSKAKGTA 360 GLDYSLFPSK AEATPEFHRA LSLLSIDSRG SCDPQSISFE QPMHTNHTSM PQSVLHAVPQ 420 SSPLALSEYW RTEQQSNYPQ VHALGSRSDG SNYLQEFQLF RTSNGNDFYS SHMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-26 | 185 | 258 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 240 | 257 | KKKSCRRRLSDHNARRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0056s0240.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011020736.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 2 isoform X2 | ||||
TrEMBL | A0A2K2BSW3 | 0.0 | A0A2K2BSW3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s17120.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43270.3 | 4e-74 | squamosa promoter binding protein-like 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0056s0240.3.p |