PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0056s0240.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 481aa    MW: 53116.8 Da    PI: 8.7544
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0056s0240.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP126.11.4e-39184260177
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                             +Cqv++C+ dls+ak+yhr+h+vCe hsk+p+v+v+gle+rfCqqCsrfh lsefDe+k+sCrrrL++hn+rrrk++
  SapurV1A.0056s0240.2.p 184 RCQVQDCNLDLSSAKDYHRKHRVCESHSKCPKVIVAGLERRFCQQCSRFHGLSEFDEKKKSCRRRLSDHNARRRKQS 260
                             6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.5E-32177246IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129182259IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.32E-37183264IPR004333Transcription factor, SBP-box
PfamPF031106.2E-30185258IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MSSVSLMEWN GKPHLQWDWE NLIMFNAITN ENSKQLSLTD LEADGEKGND SGFFYSSGSA  60
SRSRGSISDL ELASFSKSAS TNSSSAGEVK TSNFTLEASK INPSDYNKEE LVKAKVTGTS  120
PTLEASVGSG DQLLGLKLGK RTYFEDACAG SNAQSSAVST IHVPSSFTPA KKLKSGNHSQ  180
RAPRCQVQDC NLDLSSAKDY HRKHRVCESH SKCPKVIVAG LERRFCQQCS RFHGLSEFDE  240
KKKSCRRRLS DHNARRRKQS GSVHLNPSRL SSSLYDERQQ MSHVWDKAPL VHSRPNANLT  300
WESTSASKFT ITKEYIAKPA EIGGSDRRFH MPGIDLTNSN AIQHHHKSNG FLPSKAKGTA  360
GDALNQGLDY SLFPSKAEAT PEFHRALSLL SIDSRGSCDP QSISFEQPMH TNHTSMPQSV  420
LHAVPQSSPL ALSEYWRTEQ QSNYPQVHAL GSRSDGSNYL QEFQLFRTSN GNDFYSSHMN  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261852581184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240257KKKSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0056s0240.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020736.10.0PREDICTED: squamosa promoter-binding-like protein 2 isoform X2
TrEMBLA0A2K2BSW30.0A0A2K2BSW3_POPTR; Uncharacterized protein
STRINGPOPTR_0003s17120.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-74squamosa promoter binding protein-like 2