PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0056s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CAMTA
Protein Properties Length: 972aa    MW: 108586 Da    PI: 5.3715
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0056s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.76e-55131273116
                    CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                             +e ++rwlk+ e+  iL+n++k+++t+e+ ++p+sgsl+L+n++++r+fr+DG++w+kkkdg+tv E+he+LKvg+ve+++cyYah+
  SapurV1A.0056s0050.1.p  13 EEaQTRWLKPAEVFFILQNHDKYQFTNEPLQKPTSGSLFLFNKRILRFFRRDGHNWRKKKDGRTVGEAHERLKVGNVETINCYYAHG 99 
                             55599********************************************************************************** PP

                    CG-1  89 eenptfqrrcywlLeeelekivlvhyle 116
                             e+np+fqrr+yw+L++++e+ivlvhy+e
  SapurV1A.0056s0050.1.p 100 EQNPNFQRRSYWMLDQAFEHIVLVHYRE 127
                             **************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3788134IPR005559CG-1 DNA-binding domain
SMARTSM010765.2E-7511129IPR005559CG-1 DNA-binding domain
PfamPF038595.5E-4814127IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.104.3E-9405494IPR013783Immunoglobulin-like fold
PfamPF018333.6E-9410493IPR002909IPT domain
SuperFamilySSF812961.01E-17411494IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.204.0E-15607703IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512608700IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.0E-16611702IPR020683Ankyrin repeat-containing domain
CDDcd002041.22E-13628700No hitNo description
PfamPF127962.6E-7629701IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0032641670IPR002110Ankyrin repeat
PROSITE profilePS5008811.22641673IPR002110Ankyrin repeat
SMARTSM002483800680709IPR002110Ankyrin repeat
SMARTSM0001517758780IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.876759788IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.25E-9759864IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.24812834IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.95813842IPR000048IQ motif, EF-hand binding site
PfamPF006120.02815833IPR000048IQ motif, EF-hand binding site
SMARTSM000154.8E-5835857IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.956836860IPR000048IQ motif, EF-hand binding site
PfamPF006123.9E-5838857IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 972 aa     Download sequence    Send to blast
MLQSGYDINS LFEEAQTRWL KPAEVFFILQ NHDKYQFTNE PLQKPTSGSL FLFNKRILRF  60
FRRDGHNWRK KKDGRTVGEA HERLKVGNVE TINCYYAHGE QNPNFQRRSY WMLDQAFEHI  120
VLVHYREISE GKPSPGSAAQ LSPGFSYSPS SNTSQTQGST SAISGVYEQN LSLSSPASVE  180
VNSGLDIKDI GVDSTVTQCL RRLEEQLSLN EDNFKEIGSY GGEEGATNDS KLLECVNHIS  240
KEDQSKNLLC GSQCIVDYQS YGEHAGKQPE RNNLSPLQDA AGDSGAYQQS YSQYYTGGSK  300
ESLSWNEVFE SYETSPGIEY QENPKSSLMM ETAQEQENSL WMNFDETNYG NSSLLLPQEF  360
EGFEIPTYSS VTETHENNAD CYAMLYDQGH LGMPIEADSS LTVAQQQKFS IREISPQWGY  420
ATEATKVIIV GSFLCDPSES SWTCMLGDTE VPLQIIQEGV ICCEAPPHQP GKVTLCITSG  480
NRESCSEIRD FDYRAKDNSY AHCNLSHTEA TKSPEELLLL VRFVQMLLSD FSLQRGDSIE  540
TEIHLLQKLK ADDDSWGYII EGLLIGSGTS STTVDWLLQQ LLKDKLRQWL SSKSQEQHDH  600
PGCSLSKKEQ GIIHMLAGLG FEWALSPILS HGVSINFRDI NGWTALHWAA RFGREKMVAS  660
LLASGASAGA VTDPSSQDPI GKTAASIAAS SGHKGLAGYL SEVALTSHLS SLRLKESELS  720
KGSAEVEAER AVDGISKESF AANEDQVSLK DTLAAVRNAA QAAARIQSAF RAHSFRRRQD  780
REASILDEYG ISAVDIQGLS AMSKLAFRNT QDINSAALSI QKKYRGWKGR KDFLELRQKV  840
VKIQAHVRGY RVRKNYKVIC WAVGILDKVV LRWRRKGIGL RGFRNETESI DEREDDDILK  900
MFRKQKVDGT IDEAFSRVLS MVDSPDARQQ YHRMLQRYRQ AKAELGTTEA AASTSLDDAN  960
EMGNDDLYLF Q*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0056s0050.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024453205.10.0calmodulin-binding transcription activator 4
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLA0A2K2B8F50.0A0A2K2B8F5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s13700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]