PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0055s0320.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 418aa    MW: 45112.1 Da    PI: 7.0615
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0055s0320.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.96.2e-1540712455
                 G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            + +A+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0055s0320.6.p 40 ISEAVPKRILELMNVPGLTRENVASHLQKFRL 71
                            578****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-83975IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-124171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.2E-144176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MAIRCILCFG MMLVNVLMSF QKLSLRVTVS FAQHNFLATI SEAVPKRILE LMNVPGLTRE  60
NVASHLQKFR LYLKRLSGVA QQGGISNTFC GLMDSNVKVN PFGRFDIQTL DASGQIPPQT  120
LAALHAELFG RPTGSLVTTV DQPALLQASM QGFGAWPSNS NGTVGPSSNL GGMNGQNSNM  180
LMDILQQQKQ QQQSQQQSPL PEPSRSINVQ PSCLVVPSQS SATFQAGNSH ASVDHNCSYN  240
RSAMIDYSLL SPQLNNSSLN IGQISNGDLK TTSVSGYSGS VSISPLSPCS VNPDNTSQQG  300
RSSTMAIQVG RQLPGFVPNI SNFQGSYSAK SSEVLDQRPL RNLGFTGECT SIPSWLAVDE  360
FESTMRNLDH EKFYMDISGN KVKQEPSIEF VDNARVGIPI LQQLPPSPSD LMSVCTE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0055s0320.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081410.0FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466708.10.0two-component response regulator ORR21 isoform X2
TrEMBLB9HVU50.0B9HVU5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-26response regulator 2