PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0055s0320.5.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 458aa    MW: 49431 Da    PI: 7.4262
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0055s0320.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like46.76.9e-1540712455
                 G2-like 24 sekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                            + +A+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0055s0320.5.p 40 ISEAVPKRILELMNVPGLTRENVASHLQKFRL 71
                            578****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.05E-83975IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-124171IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.6E-144176IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MAIRCILCFG MMLVNVLMSF QKLSLRVTVS FAQHNFLATI SEAVPKRILE LMNVPGLTRE  60
NVASHLQKFR LYLKRLSGVA QQGGISNTFC GLMDSNVKVN PFGRFDIQTL DASGQIPPQT  120
LAALHAELFG RPTGSLVTTV DQPALLQASM QGPKCIPVEH GVAFGQPLVK CQSNISKHFP  180
RNVISFEDVA SGFGAWPSNS NGTVGPSSNL GGMNGQNSNM LMDILQQQKQ QQQSQQQSPL  240
PEPSRSINVQ PSCLVVPSQS SATFQAGNSH ASVDHNCSYN RSAMIDYSLL SPQLNNSSLN  300
IGQISNGDLK TTSVSGYSGS VSISPLSPCS VNPDNTSQQG RSSTMAIQVG RQLPGFVPNI  360
SNFQGSYSAK SSEVLDQRPL RNLGFTGECT SIPSWLAVDE FESTMRNLDH EKFYMDISGN  420
KVKQEPSIEF VDNARVGIPI LQQLPPSPSD LMSVCTE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0055s0320.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081410.0FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315852.10.0two-component response regulator ORR21 isoform X1
RefseqXP_024466708.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE313e-51ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S73e-51ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HVU50.0B9HVU5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-26response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]