PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0055s0320.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 533aa    MW: 58202.2 Da    PI: 5.0207
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0055s0320.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.92.2e-28133186155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0055s0320.4.p 133 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 186
                             79*******************.********************************8 PP
2Response_reg32.64e-1215653109
                             CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                             mp+mdG++ll+     e++lp+i+++a g  + + + ++ Ga d+l Kp+ +eel +
  SapurV1A.0055s0320.4.p   1 MPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEELKN 56 
                             9*********87754.558***********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.98E-13162No hitNo description
PfamPF000727.5E-9156IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.85E-16173IPR011006CheY-like superfamily
PROSITE profilePS5011024.92162IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23009.6E-21179No hitNo description
PROSITE profilePS5129410.898130189IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-30130191IPR009057Homeodomain-like
SuperFamilySSF466891.36E-19131190IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-24133186IPR006447Myb domain, plants
PfamPF002497.2E-7135184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MPDMDGFKLL ELVGLEMDLP VIMMSADGRT SAVMRGIRHG ACDYLIKPIR EEELKNIWQH  60
VIRKKWNENK EQEHSGSFED NDCYKQGNDD IENASSVNEG GEEGVLKGQK KRNIAKEEDD  120
NELENDDPSA SKKPRVVWSV ELHQQFVSAV NQLGIDKAVP KRILELMNVP GLTRENVASH  180
LQKFRLYLKR LSGVAQQGGI SNTFCGLMDS NVKVNPFGRF DIQTLDASGQ IPPQTLAALH  240
AELFGRPTGS LVTTVDQPAL LQASMQGFGA WPSNSNGTVG PSSNLGGMNG QNSNMLMDIL  300
QQQKQQQQSQ QQSPLPEPSR SINVQPSCLV VPSQSSATFQ AGNSHASVDH NCSYNRSAMI  360
DYSLLSPQLN NSSLNIGQIS NGDLKTTSVS GYSGSVSISP LSPCSVNPDN TSQQGRSSTM  420
AIQVGRQLPG FVPNISNFQG SYSAKSSEVL DQRPLRNLGF TGECTSIPSW LAVDEFESTM  480
RNLDHEKFYM DISGNKVKQE PSIEFVDNAR VGIPILQQLP PSPSDLMSVC TE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A9e-24129192164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0055s0320.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081410.0FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466708.10.0two-component response regulator ORR21 isoform X2
SwissprotA2XE311e-118ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-118ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HVU50.0B9HVU5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-86response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]