PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0055s0320.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARR-B | ||||||||
Protein Properties | Length: 573aa MW: 62521.2 Da PI: 5.3518 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.8 | 2.4e-28 | 133 | 186 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl SapurV1A.0055s0320.3.p 133 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 186 79*******************.********************************8 PP | |||||||
2 | Response_reg | 32.5 | 4.4e-12 | 1 | 56 | 53 | 109 |
CTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS Response_reg 53 mpgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109 mp+mdG++ll+ e++lp+i+++a g + + + ++ Ga d+l Kp+ +eel + SapurV1A.0055s0320.3.p 1 MPDMDGFKLLELVGL-EMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEELKN 56 9*********87754.558***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00156 | 2.29E-13 | 1 | 62 | No hit | No description |
Gene3D | G3DSA:3.40.50.2300 | 8.9E-21 | 1 | 79 | No hit | No description |
Pfam | PF00072 | 8.3E-9 | 1 | 56 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 24.92 | 1 | 62 | IPR001789 | Signal transduction response regulator, receiver domain |
SuperFamily | SSF52172 | 2.13E-16 | 1 | 73 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:1.10.10.60 | 4.9E-30 | 130 | 191 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.898 | 130 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-19 | 131 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-24 | 133 | 186 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-7 | 135 | 184 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MPDMDGFKLL ELVGLEMDLP VIMMSADGRT SAVMRGIRHG ACDYLIKPIR EEELKNIWQH 60 VIRKKWNENK EQEHSGSFED NDCYKQGNDD IENASSVNEG GEEGVLKGQK KRNIAKEEDD 120 NELENDDPSA SKKPRVVWSV ELHQQFVSAV NQLGIDKAVP KRILELMNVP GLTRENVASH 180 LQKFRLYLKR LSGVAQQGGI SNTFCGLMDS NVKVNPFGRF DIQTLDASGQ IPPQTLAALH 240 AELFGRPTGS LVTTVDQPAL LQASMQGPKC IPVEHGVAFG QPLVKCQSNI SKHFPRNVIS 300 FEDVASGFGA WPSNSNGTVG PSSNLGGMNG QNSNMLMDIL QQQKQQQQSQ QQSPLPEPSR 360 SINVQPSCLV VPSQSSATFQ AGNSHASVDH NCSYNRSAMI DYSLLSPQLN NSSLNIGQIS 420 NGDLKTTSVS GYSGSVSISP LSPCSVNPDN TSQQGRSSTM AIQVGRQLPG FVPNISNFQG 480 SYSAKSSEVL DQRPLRNLGF TGECTSIPSW LAVDEFESTM RNLDHEKFYM DISGNKVKQE 540 PSIEFVDNAR VGIPILQQLP PSPSDLMSVC TE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-23 | 129 | 192 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0055s0320.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908141 | 0.0 | FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466708.1 | 0.0 | two-component response regulator ORR21 isoform X2 | ||||
Swissprot | A2XE31 | 1e-131 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
Swissprot | Q8H7S7 | 1e-131 | ORR21_ORYSJ; Two-component response regulator ORR21 | ||||
TrEMBL | B9HVU5 | 0.0 | B9HVU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s11600.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 4e-86 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0055s0320.3.p |
Publications ? help Back to Top | |||
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