PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0055s0320.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARR-B
Protein Properties Length: 625aa    MW: 68174.7 Da    PI: 5.2635
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0055s0320.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.7e-28225278155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  SapurV1A.0055s0320.2.p 225 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 278
                             79*******************.********************************8 PP
2Response_reg74.54.1e-25401481109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 
                             vl+vdD+ + ++ll+++l +  y +v++++++++al+ll+e++  +D++l D+ mp+mdG++ll+     e++lp+i+++a g  + 
  SapurV1A.0055s0320.2.p  40 VLVVDDDITCLRLLEKMLCRCLY-HVTTCSQATAALKLLRERKgyFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSA 124
                             89*********************.***************999999*******************87754.558************** PP

                             HHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  86 alealkaGakdflsKpfdpeelvk 109
                             + + ++ Ga d+l Kp+ +eel +
  SapurV1A.0055s0320.2.p 125 VMRGIRHGACDYLIKPIREEELKN 148
                             *********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23004.9E-4237171No hitNo description
SuperFamilySSF521721.28E-3537165IPR011006CheY-like superfamily
SMARTSM004486.4E-2838150IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.69839154IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2240148IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.52E-2741154No hitNo description
Gene3DG3DSA:1.10.10.605.5E-30222283IPR009057Homeodomain-like
PROSITE profilePS5129410.898222281IPR017930Myb domain
SuperFamilySSF466891.7E-19223282IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-24225278IPR006447Myb domain, plants
PfamPF002498.8E-7227276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MAAFQRVASS LSTSASSYGS CKDAGADVTV SDQFPAGLRV LVVDDDITCL RLLEKMLCRC  60
LYHVTTCSQA TAALKLLRER KGYFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG  120
RTSAVMRGIR HGACDYLIKP IREEELKNIW QHVIRKKWNE NKEQEHSGSF EDNDCYKQGN  180
DDIENASSVN EGGEEGVLKG QKKRNIAKEE DDNELENDDP SASKKPRVVW SVELHQQFVS  240
AVNQLGIDKA VPKRILELMN VPGLTRENVA SHLQKFRLYL KRLSGVAQQG GISNTFCGLM  300
DSNVKVNPFG RFDIQTLDAS GQIPPQTLAA LHAELFGRPT GSLVTTVDQP ALLQASMQGF  360
GAWPSNSNGT VGPSSNLGGM NGQNSNMLMD ILQQQKQQQQ SQQQSPLPEP SRSINVQPSC  420
LVVPSQSSAT FQAGNSHASV DHNCSYNRSA MIDYSLLSPQ LNNSSLNIGQ ISNGDLKTTS  480
VSGYSGSVSI SPLSPCSVNP DNTSQQGRSS TMAIQVGRQL PGFVPNISNF QGSYSAKSSE  540
VLDQRPLRNL GFTGECTSIP SWLAVDEFES TMRNLDHEKF YMDISGNKVK QEPSIEFVDN  600
ARVGIPILQQ LPPSPSDLMS VCTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-23221284164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0055s0320.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN9081410.0FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002315852.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-150ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-150ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLB9HVU50.0B9HVU5_POPTR; Uncharacterized protein
STRINGPOPTR_0010s11600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-118response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]