PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0055s0320.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | ARR-B | ||||||||
Protein Properties | Length: 665aa MW: 72493.7 Da PI: 5.646 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 89.5 | 3e-28 | 225 | 278 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl SapurV1A.0055s0320.1.p 225 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 278 79*******************.********************************8 PP | |||||||
2 | Response_reg | 74.3 | 4.6e-25 | 40 | 148 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeed 85 vl+vdD+ + ++ll+++l + y +v++++++++al+ll+e++ +D++l D+ mp+mdG++ll+ e++lp+i+++a g + SapurV1A.0055s0320.1.p 40 VLVVDDDITCLRLLEKMLCRCLY-HVTTCSQATAALKLLRERKgyFDVVLSDVHMPDMDGFKLLELVGL-EMDLPVIMMSADGRTSA 124 89*********************.***************999999*******************87754.558************** PP HHHHHHTTESEEEESS--HHHHHH CS Response_reg 86 alealkaGakdflsKpfdpeelvk 109 + + ++ Ga d+l Kp+ +eel + SapurV1A.0055s0320.1.p 125 VMRGIRHGACDYLIKPIREEELKN 148 *********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 1.42E-35 | 37 | 165 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 6.1E-42 | 37 | 171 | No hit | No description |
SMART | SM00448 | 6.4E-28 | 38 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.698 | 39 | 154 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 4.8E-22 | 40 | 148 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.95E-27 | 41 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-30 | 222 | 283 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.898 | 222 | 281 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.79E-19 | 223 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-24 | 225 | 278 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.6E-7 | 227 | 276 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MAAFQRVASS LSTSASSYGS CKDAGADVTV SDQFPAGLRV LVVDDDITCL RLLEKMLCRC 60 LYHVTTCSQA TAALKLLRER KGYFDVVLSD VHMPDMDGFK LLELVGLEMD LPVIMMSADG 120 RTSAVMRGIR HGACDYLIKP IREEELKNIW QHVIRKKWNE NKEQEHSGSF EDNDCYKQGN 180 DDIENASSVN EGGEEGVLKG QKKRNIAKEE DDNELENDDP SASKKPRVVW SVELHQQFVS 240 AVNQLGIDKA VPKRILELMN VPGLTRENVA SHLQKFRLYL KRLSGVAQQG GISNTFCGLM 300 DSNVKVNPFG RFDIQTLDAS GQIPPQTLAA LHAELFGRPT GSLVTTVDQP ALLQASMQGP 360 KCIPVEHGVA FGQPLVKCQS NISKHFPRNV ISFEDVASGF GAWPSNSNGT VGPSSNLGGM 420 NGQNSNMLMD ILQQQKQQQQ SQQQSPLPEP SRSINVQPSC LVVPSQSSAT FQAGNSHASV 480 DHNCSYNRSA MIDYSLLSPQ LNNSSLNIGQ ISNGDLKTTS VSGYSGSVSI SPLSPCSVNP 540 DNTSQQGRSS TMAIQVGRQL PGFVPNISNF QGSYSAKSSE VLDQRPLRNL GFTGECTSIP 600 SWLAVDEFES TMRNLDHEKF YMDISGNKVK QEPSIEFVDN ARVGIPILQQ LPPSPSDLMS 660 VCTE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-23 | 221 | 284 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0055s0320.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FN908141 | 0.0 | FN908141.1 Populus x canadensis mRNA for putative B-type response regulator 16 (rr16 gene), cultivar Dorskamp. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002315852.1 | 0.0 | two-component response regulator ORR21 isoform X1 | ||||
Swissprot | A2XE31 | 1e-162 | ORR21_ORYSI; Two-component response regulator ORR21 | ||||
TrEMBL | B9HVU5 | 0.0 | B9HVU5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s11600.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11808 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-118 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0055s0320.1.p |