PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0055s0270.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HSF | ||||||||
Protein Properties | Length: 392aa MW: 44540.7 Da PI: 4.4043 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 111.6 | 5.5e-35 | 12 | 104 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Flkk ye+++de+++++isws++++sfv+ d++ef+ ++LpkyFkhsn +SFvRQLn+YgF+k+++++ weF+++ F + SapurV1A.0055s0270.1.p 12 FLKKCYEMVDDESTNSIISWSQTNDSFVIRDMTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDQ---------WEFANDGFIR 89 9****************************************************************999.........********** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll++i r+k++ SapurV1A.0055s0270.1.p 90 GQKHLLKNICRRKNS 104 ************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 9.11E-33 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 7.9E-53 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 9.6E-36 | 8 | 101 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 4.3E-18 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.1E-30 | 12 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-18 | 50 | 62 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 51 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 4.3E-18 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MVKSSESGVA PFLKKCYEMV DDESTNSIIS WSQTNDSFVI RDMTEFSVHL LPKYFKHSNS 60 SSFVRQLNIY GFRKIDTDQW EFANDGFIRG QKHLLKNICR RKNSQVTDNR KSVQQQDNSI 120 DHCESVENAG LWKEVESLKT GKSALAQELV KLGQHQETAD NKLLLLRDRL QGMEKNQQQM 180 LSFLVMVVQN PGFLAQLLHK KENNWRMAEP GSIVEQGADD VYLLASEGMI VRYQPPVDEM 240 FEPVHAPPIG PENPLESNPS SDGMKDFFVN PDFMELLMDE NLGSENHASF VLPELADDGS 300 WEHMFLANPF IENTKDTKPE SEESPDTETD TGTTVAGTQL ERSQNFEYLI EQMEKSSDLE 360 NKAADGPYFD KSQNLEILTW QMDLLASEPN H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 6e-23 | 4 | 104 | 12 | 123 | Heat shock factor protein 1 |
5d5u_B | 7e-23 | 4 | 101 | 21 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-23 | 4 | 101 | 21 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-23 | 4 | 101 | 21 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0055s0270.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147413 | 0.0 | EF147413.1 Populus trichocarpa clone WS01230_L11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466831.1 | 0.0 | heat stress transcription factor A-8 | ||||
TrEMBL | A0A2K1YRV8 | 0.0 | A0A2K1YRV8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s11490.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10419 | 29 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67970.1 | 1e-108 | heat shock transcription factor A8 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0055s0270.1.p |