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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
SapurV1A.0055s0040.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 280aa MW: 31250.9 Da PI: 10.2001 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0055s0040.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 331.2 | 2.9e-101 | 1 | 279 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkal 74
mddd+ + r++gyyep+ +e lglqlm + +rd+k r+ n +++ ++a+ +rd ++ +rd++++
SapurV1A.0055s0040.1.p 1 MDDDALNMRKWGYYEPS--YREPLGLQLMPAMVDRDSKHllprRDPNNIMIGANGAYLPRDsvvsdapmhLSY-MRDSWMNR----- 79
9***9999*******99..9999***************99**9999999************999999976677.89999988..... PP
GAGA_bind 75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpk 160
+k+l++l+++ + + +l++t+ ++s+ + l+++ ++ + +e++ +++ + ++ kk++ ++ pk
SapurV1A.0055s0040.1.p 80 ----EKFLNMLPQNPN--------YVALPETSGAQSMSM-----LQPPESSrDERVSRIEEPSVSN-----EGSQLKKRQVGGTAPK 144
....89*****95554........7899**********9.....5554444122233333333333.....3333333334467777 PP
GAGA_bind 161 ekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvs 247
+k kk++k k+ +++++ +r+k kks+d+v+ng+++D+s++P+PvCsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP+s
SapurV1A.0055s0040.1.p 145 LPKPKKPRKP-----KDGNSNTV-QRAKPAKKSVDVVINGIDMDISGIPIPVCSCTGTPQQCYRWGCGGWQSACCTTNISIYPLPMS 225
7777777772.....22333333.6899*********************************************************** PP
GAGA_bind 248 tkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
tkrrgaRiagrKmSqgafkk+LekLaaeGy+++np+DL++hWA+HGtnkfvtir
SapurV1A.0055s0040.1.p 226 TKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRTHWARHGTNKFVTIR 279
*****************************************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 280 aa
Download sequence Send
to blast |
MDDDALNMRK WGYYEPSYRE PLGLQLMPAM VDRDSKHLLP RRDPNNIMIG ANGAYLPRDS 60
VVSDAPMHLS YMRDSWMNRE KFLNMLPQNP NYVALPETSG AQSMSMLQPP ESSRDERVSR 120
IEEPSVSNEG SQLKKRQVGG TAPKLPKPKK PRKPKDGNSN TVQRAKPAKK SVDVVINGID 180
MDISGIPIPV CSCTGTPQQC YRWGCGGWQS ACCTTNISIY PLPMSTKRRG ARIAGRKMSQ 240
GAFKKVLEKL AAEGYNFANP IDLRTHWARH GTNKFVTIR*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU130561 | 0.0 | EU130561.1 Populus trichocarpa GAGA-motif binding transcriptional activator (BBR/BPC2) mRNA, complete cds. |
