PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0055s0020.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 347aa MW: 38645.7 Da PI: 9.2259 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 16.5 | 2.4e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ SapurV1A.0055s0020.2.p 61 WVCEKCSKGYAVQSDYKAHLKTC 83 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 3.3E-4 | 52 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MHRRRHKVPW KLLKRETQEV KKRVYVCPEP SCLHHDPFHA LGDLVGIKKH FRRKHSNHKQ 60 WVCEKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACK VRRAQPELQA 120 PQQASSRTAS STSPSSDANF SIVPLPGIPT PKATGPVYLY SDRNDASSSQ QEHNLELQLL 180 PSSSTHLPQN PDEGYATNLK LSIGSSESSI KKEQFKAIMD PSGPKRTYEP TLEAAKLEEF 240 ANEQLRVAIT GKAYAEEARQ HAKRQIEMAE LEFANARRIR QQAQAELGKA QVLREQATKK 300 ISSTIMQVTC QACKLQFKLP TAAASADETS LAMSYMSSAI TEGDGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-18 | 59 | 109 | 5 | 55 | Zinc finger protein JACKDAW |
5b3h_F | 4e-18 | 59 | 109 | 5 | 55 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0055s0020.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147067 | 0.0 | EF147067.1 Populus trichocarpa clone WS01227_A11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006378427.1 | 0.0 | protein SHOOT GRAVITROPISM 5 isoform X1 | ||||
Swissprot | F4IPE3 | 1e-121 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A9PFF0 | 0.0 | A9PFF0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s11160.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.2 | 1e-104 | indeterminate(ID)-domain 14 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0055s0020.2.p |
Publications ? help Back to Top | |||
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