PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0054s0370.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19841.8 Da PI: 6.0142 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121 | 6.6e-38 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +CaaC++lrr+C ++C+lapyfp ++++kf vhk+FGasnv+++++ ++e+++eda+++++yeA r+rdPvyG++g+i++lq+ + SapurV1A.0054s0370.1.p 14 PCAACRMLRRRCDSNCMLAPYFPGDEAEKFFGVHKVFGASNVIRMIQMVEESKKEDAVKAIIYEATSRLRDPVYGSAGTIFHLQKMV 100 7************************************************************************************** PP DUF260 88 eqlkaelallkee 100 e lk ++++++++ SapurV1A.0054s0370.1.p 101 EDLKIQVESMRAQ 113 ******9998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.240.10 | 7.8E-4 | 7 | 28 | IPR001138 | Zn(2)-C6 fungal-type DNA-binding domain |
PROSITE profile | PS50891 | 24.425 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.6E-38 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MSSDTLTRTR AHQPCAACRM LRRRCDSNCM LAPYFPGDEA EKFFGVHKVF GASNVIRMIQ 60 MVEESKKEDA VKAIIYEATS RLRDPVYGSA GTIFHLQKMV EDLKIQVESM RAQVVQLQEQ 120 KNQLLGILMN VRHLDSTSSI HERKFDGGDL MLDEDPLMAY DPITFFTEND WTF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-32 | 7 | 116 | 4 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-32 | 7 | 116 | 4 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0054s0370.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002321198.1 | 1e-117 | LOB domain-containing protein 1 | ||||
TrEMBL | B9IAT5 | 1e-116 | B9IAT5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s16510.1 | 1e-116 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14068 | 19 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 5e-44 | LOB domain-containing protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0054s0370.1.p |