PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0054s0320.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 583aa    MW: 65580.3 Da    PI: 6.4676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0054s0320.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12121161445
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             W t+E+ ll+++++++G g+W+ +++++g +++  qc+++++
  SapurV1A.0054s0320.2.p 121 WNTDEEILLLEGIEMYGFGNWTEVSEHVG-TKSKSQCIDHYN 161
                             *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250242.2E-15250582IPR016827Transcriptional adaptor 2
SMARTSM002912.0E-957102IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.81261104IPR000433Zinc finger, ZZ-type
SuperFamilySSF578505.77E-1461124No hitNo description
PfamPF005691.1E-961101IPR000433Zinc finger, ZZ-type
CDDcd023352.65E-2561109No hitNo description
PROSITE patternPS0135706390IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-12113167IPR009057Homeodomain-like
PROSITE profilePS5129320.448116168IPR017884SANT domain
SMARTSM007174.8E-11117166IPR001005SANT/Myb domain
PfamPF002492.3E-12120161IPR001005SANT/Myb domain
CDDcd001672.42E-11121161No hitNo description
Gene3DG3DSA:1.10.10.606.8E-8121163IPR009057Homeodomain-like
SuperFamilySSF466893.4E-17494579IPR009057Homeodomain-like
PROSITE profilePS509349.524496582IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MGRSRGRPPS SGTSAAAAAA SDDPNNRSSK KRKKTTSNVG RIEIAFPAVY QETSQGKPAL  60
YHCNYCHKDI SGMVRIKCAV CPDFDLCVEC FSVGAEVTPH KSNHLYRVMD NLSFPLFCPD  120
WNTDEEILLL EGIEMYGFGN WTEVSEHVGT KSKSQCIDHY NAVYMDSPCF PLPDMSHVMG  180
KTREELLAMA KGNVEMKKEF SAFEELTLNQ ESPFSVKIKS DASKKEDLAS HSSSVLNAEL  240
STHMGSSSGN TFSDAVKKAS NEAQVKDKIK VEEPLSDRSI GEKKPRLCGE EGPSMTELSG  300
YNVKRQEFEI EYDNDAEQLL ADMEFKDTDT DAELDMKLRV LRVYSKRLDE RKRRKDFILE  360
RNLFYHDAFE KNLSPEEKEI YQRYKVFMRF HTKEEHEELM KTVIEDHRIM KRIQDLQEAR  420
AAGCQTAGEA QGFIDQKRKK EAEENAQRAK ECMPAGPAGK LLQKPNNLDS SPRGAVRCST  480
VFHPGGNDSS LMIAKQSISS SLDEWDITGF LGADLLSESD KRLCCELRIL PAHYLNMLHI  540
MSIEITKGTL SNKTDAHSLF KVESSKVDKV YDMLMKKGIA RA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E1e-36611765120Transcriptional adapter 2
6cw3_G1e-36611765120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12933KKRKK
2350355RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0054s0320.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441566.10.0transcriptional adapter ADA2a isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2K1XX210.0A0A2K1XX21_POPTR; Transcriptional adapter
STRINGPOPTR_0014s16430.10.0(Populus trichocarpa)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]