PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0054s0320.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 584aa    MW: 65667.4 Da    PI: 6.4676
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0054s0320.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-12122162445
                             S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             W t+E+ ll+++++++G g+W+ +++++g +++  qc+++++
  SapurV1A.0054s0320.1.p 122 WNTDEEILLLEGIEMYGFGNWTEVSEHVG-TKSKSQCIDHYN 162
                             *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250242.3E-15251583IPR016827Transcriptional adaptor 2
SMARTSM002912.0E-958103IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.81262105IPR000433Zinc finger, ZZ-type
CDDcd023352.61E-2562110No hitNo description
SuperFamilySSF578505.77E-1462125No hitNo description
PfamPF005691.1E-962102IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135706491IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.72E-12114168IPR009057Homeodomain-like
PROSITE profilePS5129320.448117169IPR017884SANT domain
SMARTSM007174.8E-11118167IPR001005SANT/Myb domain
PfamPF002492.3E-12121162IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-8122164IPR009057Homeodomain-like
CDDcd001672.34E-11122162No hitNo description
SuperFamilySSF466893.4E-17495580IPR009057Homeodomain-like
PROSITE profilePS509349.524497583IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009409Biological Processresponse to cold
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MGRSRGRPPS SGTSAAAAAA SDDPNNSRSS KKRKKTTSNV GRIEIAFPAV YQETSQGKPA  60
LYHCNYCHKD ISGMVRIKCA VCPDFDLCVE CFSVGAEVTP HKSNHLYRVM DNLSFPLFCP  120
DWNTDEEILL LEGIEMYGFG NWTEVSEHVG TKSKSQCIDH YNAVYMDSPC FPLPDMSHVM  180
GKTREELLAM AKGNVEMKKE FSAFEELTLN QESPFSVKIK SDASKKEDLA SHSSSVLNAE  240
LSTHMGSSSG NTFSDAVKKA SNEAQVKDKI KVEEPLSDRS IGEKKPRLCG EEGPSMTELS  300
GYNVKRQEFE IEYDNDAEQL LADMEFKDTD TDAELDMKLR VLRVYSKRLD ERKRRKDFIL  360
ERNLFYHDAF EKNLSPEEKE IYQRYKVFMR FHTKEEHEEL MKTVIEDHRI MKRIQDLQEA  420
RAAGCQTAGE AQGFIDQKRK KEAEENAQRA KECMPAGPAG KLLQKPNNLD SSPRGAVRCS  480
TVFHPGGNDS SLMIAKQSIS SSLDEWDITG FLGADLLSES DKRLCCELRI LPAHYLNMLH  540
IMSIEITKGT LSNKTDAHSL FKVESSKVDK VYDMLMKKGI ARA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E1e-36621775120Transcriptional adapter 2
6cw3_G1e-36621775120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13034KKRKK
2351356RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0054s0320.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441566.10.0transcriptional adapter ADA2a isoform X1
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2K1XX210.0A0A2K1XX21_POPTR; Transcriptional adapter
STRINGPOPTR_0014s16430.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]