PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0054s0150.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 482aa    MW: 52887.3 Da    PI: 6.5112
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0054s0150.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.21.4e-27108165260
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                             +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C++kk++e+s+ d+k+ +i+  geH+h+k
  SapurV1A.0054s0150.3.p 108 EDGYHWRKYGQKLVKGNEFIRSYYKCTHPSCQAKKQLECSH-DGKLADIVHIGEHEHPK 165
                             7***************************************9.***************85 PP
2WRKY103.61.1e-32277334259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk v++ Yeg+H+h+
  SapurV1A.0054s0150.3.p 277 SDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKSVVTSYEGQHDHD 334
                             8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-24102166IPR003657WRKY domain
PROSITE profilePS5081121.184102166IPR003657WRKY domain
SuperFamilySSF1182901.96E-22103166IPR003657WRKY domain
SMARTSM007747.0E-30107165IPR003657WRKY domain
PfamPF031065.2E-21108164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-35262336IPR003657WRKY domain
SuperFamilySSF1182901.83E-28268336IPR003657WRKY domain
PROSITE profilePS5081136.082271336IPR003657WRKY domain
SMARTSM007743.9E-37276335IPR003657WRKY domain
PfamPF031064.0E-25278333IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MVSSEEVPDE VSPKELQKRQ SPDDGTDTAP HTHNGGGHDA SQQEGIPASY APEKSLENTG  60
GRILELDKEG SVSSITPRNV PHTPGSDLRS LQSGQEVRAP IMREKVSEDG YHWRKYGQKL  120
VKGNEFIRSY YKCTHPSCQA KKQLECSHDG KLADIVHIGE HEHPKPQLKL PQAIGCVLSV  180
VEEKPDHLLM IGVEESHEPH PIESTNTSQI SSVTSSEDVK HVLSEPKRTR DEVDVDDDQH  240
SKRRKKGSSN DRSTPVDMPT SEPRLVIQTK SEVDIVSDGY RWRKYGQKLV KGNPNPRSYY  300
RCSSPGCPVK KHVERASHDP KSVVTSYEGQ HDHDMPPSRT ITQNTTGLST CTTTIQNDEL  360
GTKSGESNVI SLEMVALNSS DSNIKLEEKP SSESINKRKE SKSREQQNGK TNTTIVSGAA  420
NLGIVVKTNP VSAGRSTEQH DGESRIDPKE NSAACGVHNI TPGPESNPNE QHVLNSEPVQ  480
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-36106337275WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00094SELEXTransfer from AT2G04880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0054s0150.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3774220.0GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375555.10.0WRKY transcription factor 1
RefseqXP_006375556.10.0WRKY transcription factor 1
RefseqXP_024440287.10.0WRKY transcription factor 1
TrEMBLC9DHZ10.0C9DHZ1_9ROSI; WRKY transcription factor 2
STRINGPOPTR_0014s16220.20.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.22e-87zinc-dependent activator protein-1