PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0054s0150.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 482aa MW: 52887.3 Da PI: 6.5112 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.2 | 1.4e-27 | 108 | 165 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 +Dgy+WrKYGqK vkg+ef rsYY+Ct+++C++kk++e+s+ d+k+ +i+ geH+h+k SapurV1A.0054s0150.2.p 108 EDGYHWRKYGQKLVKGNEFIRSYYKCTHPSCQAKKQLECSH-DGKLADIVHIGEHEHPK 165 7***************************************9.***************85 PP | |||||||
2 | WRKY | 103.6 | 1.1e-32 | 277 | 334 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrC+s+gCpvkk+ver+++dpk v++ Yeg+H+h+ SapurV1A.0054s0150.2.p 277 SDGYRWRKYGQKLVKGNPNPRSYYRCSSPGCPVKKHVERASHDPKSVVTSYEGQHDHD 334 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.7E-24 | 102 | 166 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.184 | 102 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-22 | 103 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.0E-30 | 107 | 165 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-21 | 108 | 164 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.8E-35 | 262 | 336 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-28 | 268 | 336 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 36.082 | 271 | 336 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-37 | 276 | 335 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.0E-25 | 278 | 333 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MVSSEEVPDE VSPKELQKRQ SPDDGTDTAP HTHNGGGHDA SQQEGIPASY APEKSLENTG 60 GRILELDKEG SVSSITPRNV PHTPGSDLRS LQSGQEVRAP IMREKVSEDG YHWRKYGQKL 120 VKGNEFIRSY YKCTHPSCQA KKQLECSHDG KLADIVHIGE HEHPKPQLKL PQAIGCVLSV 180 VEEKPDHLLM IGVEESHEPH PIESTNTSQI SSVTSSEDVK HVLSEPKRTR DEVDVDDDQH 240 SKRRKKGSSN DRSTPVDMPT SEPRLVIQTK SEVDIVSDGY RWRKYGQKLV KGNPNPRSYY 300 RCSSPGCPVK KHVERASHDP KSVVTSYEGQ HDHDMPPSRT ITQNTTGLST CTTTIQNDEL 360 GTKSGESNVI SLEMVALNSS DSNIKLEEKP SSESINKRKE SKSREQQNGK TNTTIVSGAA 420 NLGIVVKTNP VSAGRSTEQH DGESRIDPKE NSAACGVHNI TPGPESNPNE QHVLNSEPVQ 480 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-36 | 106 | 337 | 2 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00094 | SELEX | Transfer from AT2G04880 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0054s0150.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ377422 | 0.0 | GQ377422.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006375555.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_006375556.1 | 0.0 | WRKY transcription factor 1 | ||||
Refseq | XP_024440287.1 | 0.0 | WRKY transcription factor 1 | ||||
TrEMBL | C9DHZ1 | 0.0 | C9DHZ1_9ROSI; WRKY transcription factor 2 | ||||
STRING | POPTR_0014s16220.2 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-87 | zinc-dependent activator protein-1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0054s0150.2.p |