PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0053s0310.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 955aa    MW: 106561 Da    PI: 5.5034
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0053s0310.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.21.8e-05724784154
                             TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                             +rkRt ++++q++ +e++   ++ +  +a++ +  A+kl     ++t +q k+W  Nr+a+
  SapurV1A.0053s0310.1.p 724 KRKRTIMNDYQITLMEKALLDEPEMqrNAAALQSWADKLslhgsEVTPSQLKNWLNNRKAR 784
                             79*****************99777722567899******9999999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-5713787IPR009057Homeodomain-like
PROSITE profilePS5007110.171721788IPR001356Homeobox domain
SMARTSM003894.2E-6723792IPR001356Homeobox domain
CDDcd000861.37E-5724787No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0060195Biological Processnegative regulation of antisense RNA transcription
GO:0005730Cellular Componentnucleolus
GO:0003697Molecular Functionsingle-stranded DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MRLAKEETSM AEQVIDLISA VKELHGLSSQ ELNKLLRDSE NFTIHFHSGK GSTTKIDVEK  60
LAGLLPLHLI AVLLSSDRDE SLLRYLLCGI RLLHSLCDLG SRNSKLEQVL LDDVKVSEQL  120
LDLVFYLVIV LSGYGQENLN SCSLLLVHSA LVASSLQLLS GCISSQWQDL VQVLLAHPKV  180
DIFMDAAFGA VHVAIRFLQV MLSDQNTGLH VKSPTAEQIV DYICQQCEAS LQILQSLCQQ  240
KMFRERLLRN KELCGKGGVL FLARSILKLN ITPPFVDSFT VVAAVSRLKA KVLSILLHLC  300
EAESISYLDE VASSPWSLDL AKSVVLEILE LLKAALNKDP NHLSSRPDRT FPMGLLQLNA  360
MRLADIFSDD SNFRSYITTC FTKLLTAIFS LPHGDFLSIW CSSKFPPREE DGTLEYDTFT  420
AAGWFLDTFA AANLSNAINL EITLTPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ  480
ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA LRAVAVCRNL RSLLSHAESL IPNFLNEEDV  540
QLLRVFFNQL QSLINPTDYE ENQVQEFKTE RSISLDKFSR LTIDEHLQEA QSTGAYGSPM  600
VMKEPSHPYN RTDIQKEEMS ENSAIQEEKP NFKNMNQVED AFKEDKAKSG ACVSDVLREI  660
DRDAHIVETS GSDTSSTRGK TYAGQVVNGD LLKSSEHIKR SGCQGVCGGE KVESPHFEEK  720
QPRKRKRTIM NDYQITLMEK ALLDEPEMQR NAAALQSWAD KLSLHGSEVT PSQLKNWLNN  780
RKARLARAGK DVRAPMEVDN TFPEKQLGQE QRQDTPESPG EDKITSSARG LKNTSEIGVF  840
EDPEAGIGLA DFIDIGASES VQCKPGQLVV LVDGQGEEIG KGKVYQVQGK WYGRMLEGSG  900
MCVVDVIELK TGKWARLPYP SETTGMSFDE AEQKIGVMRV LWDSNKIYMS RPQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1719725KQPRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0053s0310.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826650.0AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441458.10.0nodulin homeobox
TrEMBLA0A2K1XV780.0A0A2K1XV78_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF386946