PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0051s0120.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 328aa    MW: 37357.8 Da    PI: 9.6976
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0051s0120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.35.5e-31201254255
                 G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             pr+rWt++LH+rFv+ave LGG+e+AtPk +lelm+vk+Ltl+hvkSHLQ YR+
  SapurV1A.0051s0120.4.p 201 PRMRWTTTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQLYRT 254
                             9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.49E-14198254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.2E-27199254IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-22201254IPR006447Myb domain, plants
PfamPF002491.5E-6202253IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PTSTWRRAEE EVDLGFWKRA LDSRNPMSSM AKPDTCFELS  60
LSDPRVSEPN SNHFFNIFQN ANNCNGNNLL HSFQKNQYTH HHHHKQNRLH NHHPVLFQPQ  120
QQEGLRQELG FLRPIRGIPV YQNPPPFPFS QQTLDNTCSQ DASLAITKNT SATTFSPYQS  180
QGLMKSRFIS RFPARRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKL VLELMDVKDL  240
TLAHVKSHLQ LYRTVKTTDR AAAAPSAQSD LFDNGSSGDT SEDLMLDIQN PRSLDISRQQ  300
GRPSAHQDQD YQALWSNSSR RTWIQSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16202256357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16202256458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0051s0120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024461198.10.0probable transcription factor KAN2 isoform X3
SwissprotQ9C6162e-75KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A2K2BX860.0A0A2K2BX86_POPTR; Uncharacterized protein
STRINGPOPTR_0001s02010.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.18e-43G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]