PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0051s0120.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 380aa MW: 42926 Da PI: 8.8955 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 98 | 6.9e-31 | 201 | 254 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk +lelm+vk+Ltl+hvkSHLQ YR+ SapurV1A.0051s0120.1.p 201 PRMRWTTTLHARFVHAVELLGGHERATPKLVLELMDVKDLTLAHVKSHLQLYRT 254 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-14 | 198 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.0E-27 | 199 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.9E-22 | 201 | 254 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.8E-6 | 202 | 253 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 380 aa Download sequence Send to blast |
MELFPAQPDL SLQISPPNSK PTSTWRRAEE EVDLGFWKRA LDSRNPMSSM AKPDTCFELS 60 LSDPRVSEPN SNHFFNIFQN ANNCNGNNLL HSFQKNQYTH HHHHKQNRLH NHHPVLFQPQ 120 QQEGLRQELG FLRPIRGIPV YQNPPPFPFS QQTLDNTCSQ DASLAITKNT SATTFSPYQS 180 QGLMKSRFIS RFPARRSMRA PRMRWTTTLH ARFVHAVELL GGHERATPKL VLELMDVKDL 240 TLAHVKSHLQ LYRTVKTTDR AAAAPSAQSD LFDNGSSGDT SEDLMLDIQN PRSLDISRQQ 300 GRPSAHQDQD YQALWSNSSS REAWLHGKLK DSGGNLPSLK KDMDPKCLSY ERISDVSSST 360 LSGTSPENPN LEFTLGRPH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 3e-16 | 202 | 256 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 202 | 256 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 202 | 256 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 202 | 256 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-16 | 202 | 256 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00174 | DAP | Transfer from AT1G32240 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0051s0120.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011018495.1 | 0.0 | PREDICTED: probable transcription factor KAN2 isoform X2 | ||||
Swissprot | Q9C616 | 9e-89 | KAN2_ARATH; Probable transcription factor KAN2 | ||||
TrEMBL | U5GMY7 | 0.0 | U5GMY7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s02010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5968 | 34 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32240.1 | 2e-55 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0051s0120.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|