PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0050s0650.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

CAMTA

Protein Properties

Length: 899aa MW: 101308 Da PI: 7.2774

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0050s0650.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	164	2.5e-51	3	118	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahse 89 ++++rwl+++ei+a+L n++ +++ ++ p+sg+++L++rk++r+frkDG+swkkkkdgktv+E+he+LKvg+ve +++yYah++ SapurV1A.0050s0650.3.p 3 ESRTRWLRPNEIHAMLCNYKYFTINVKPVYLPESGTIVLFDRKMLRNFRKDGHSWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGQ 89 559********************************************************************************** PP CG-1 90 enptfqrrcywlLeeelekivlvhylevk 118 +n+tf rrcywlL+++le+ivlvhy+e++ SapurV1A.0050s0650.3.p 90 DNQTFVRRCYWLLDKSLEHIVLVHYRETQ 118 ************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	1.6E-72	1	118	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	74.452	1	123	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	8.9E-45	4	116	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	5.9E-4	345	438	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	2.4E-5	349	435	IPR002909	IPT domain
SuperFamily	SSF81296	4.62E-13	350	436	IPR014756	Immunoglobulin E-set
SuperFamily	SSF48403	2.8E-16	539	647	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.31E-15	540	644	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.7E-15	543	647	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.7E-6	552	614	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.902	552	617	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.1E-5	585	614	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.354	585	617	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.54	733	759	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	51	748	770	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.998	749	778	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0027	771	793	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	772	796	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	3.3E-4	775	792	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	63	851	873	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.309	853	881	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MEESRTRWLR PNEIHAMLCN YKYFTINVKP VYLPESGTIV LFDRKMLRNF RKDGHSWKKK 60 KDGKTVKEAH EHLKVGNVER IHVYYAHGQD NQTFVRRCYW LLDKSLEHIV LVHYRETQEL 120 QGSPATPVNS HSSSVSDQSA SRILSEEFDS GAARAYDFSE KDLRSSDNST VRSHAMRLHE 180 LNTLEWDELV TNDPGNSILP GGDKIPCFDQ HNHIAVNGSV NDGSTPSGYH LSAEISTLGI 240 LTESIVRSGN TQLNSPDSVY SQLTCAQVNT DAQRKGSIVL GTSDSLNNLV NDGLRSQDSF 300 GRWMSSILDH SPCSVDDAVL ESSISSGHDS FAPPGIDHHQ SSVQEQTFII TDFSPAWAFS 360 NETTKILVTG YFHEQYLNLA KSNLFCICGD AFVRAEIVQV GVYSCMLPSH SPGLVNFCLS 420 LDGLEPTSQI LNFEYRAPSV HDPVVSSEDK SKWEEFHLQM RLAYLLFSTS KTLDVLSNKL 480 SPTNLKEAKN FTRKTSNVSN SWAYLIKAIE DGEISVAQAK DGFFELSLKN TLKEWLSERI 540 LEGCKTTGYD AQGLGVIHLC AIIGYTWAVY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK 600 MVAALLSAGA MPNLVTDPTK ENPGGCTAAD LASARGYDGL AAYLSEKALV AQFESMIIAG 660 NITGSLQTTA TDTVNSENLS EEELYLKDTL AAYRTAADAA ARIQVAFREH SLKVRTKAVQ 720 LSSPEDEARN IIAAMKIQHA FRNHDSKKKM AAAARIQHRF RTWKIRRDFL NMRHHAIKIQ 780 AVFRGFQVRR QFIKIIWSVG VLEKAVLRWR LKRRGFRGLR VEPVEAVVDQ THESDTEEDF 840 YKLSQKQAEE RVERSVIRVQ AMFRSKKAQE EYWRMKLTHK QAKVEYEGLL DSDMNVDR*

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MEESRTRWLR PNEIHAMLCN YKYFTINVKP VYLPESGTIV LFDRKMLRNF RKDGHSWKKK  60
KDGKTVKEAH EHLKVGNVER IHVYYAHGQD NQTFVRRCYW LLDKSLEHIV LVHYRETQEL  120
QGSPATPVNS HSSSVSDQSA SRILSEEFDS GAARAYDFSE KDLRSSDNST VRSHAMRLHE  180
LNTLEWDELV TNDPGNSILP GGDKIPCFDQ HNHIAVNGSV NDGSTPSGYH LSAEISTLGI  240
LTESIVRSGN TQLNSPDSVY SQLTCAQVNT DAQRKGSIVL GTSDSLNNLV NDGLRSQDSF  300
GRWMSSILDH SPCSVDDAVL ESSISSGHDS FAPPGIDHHQ SSVQEQTFII TDFSPAWAFS  360
NETTKILVTG YFHEQYLNLA KSNLFCICGD AFVRAEIVQV GVYSCMLPSH SPGLVNFCLS  420
LDGLEPTSQI LNFEYRAPSV HDPVVSSEDK SKWEEFHLQM RLAYLLFSTS KTLDVLSNKL  480
SPTNLKEAKN FTRKTSNVSN SWAYLIKAIE DGEISVAQAK DGFFELSLKN TLKEWLSERI  540
LEGCKTTGYD AQGLGVIHLC AIIGYTWAVY LFSWSGLSLD FRDKHGWTAL HWAAYYGREK  600
MVAALLSAGA MPNLVTDPTK ENPGGCTAAD LASARGYDGL AAYLSEKALV AQFESMIIAG  660
NITGSLQTTA TDTVNSENLS EEELYLKDTL AAYRTAADAA ARIQVAFREH SLKVRTKAVQ  720
LSSPEDEARN IIAAMKIQHA FRNHDSKKKM AAAARIQHRF RTWKIRRDFL NMRHHAIKIQ  780
AVFRGFQVRR QFIKIIWSVG VLEKAVLRWR LKRRGFRGLR VEPVEAVVDQ THESDTEEDF  840
YKLSQKQAEE RVERSVIRVQ AMFRSKKAQE EYWRMKLTHK QAKVEYEGLL DSDMNVDR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0050s0650.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009959.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Refseq	XP_011009967.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	B9HWX4	0.0	B9HWX4_POPTR; Uncharacterized protein
STRING	POPTR_0010s15160.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	SapurV1A.0050s0650.3.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]