PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0050s0650.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CAMTA
Protein Properties Length: 944aa    MW: 106654 Da    PI: 7.0066
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0050s0650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1164.51.8e-51471633118
                    CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                             +e ++rwl+++ei+a+L n++ +++  ++   p+sg+++L++rk++r+frkDG+swkkkkdgktv+E+he+LKvg+ve +++yYah+
  SapurV1A.0050s0650.1.p  47 EEsRTRWLRPNEIHAMLCNYKYFTINVKPVYLPESGTIVLFDRKMLRNFRKDGHSWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHG 133
                             4459*********************************************************************************** PP

                    CG-1  89 eenptfqrrcywlLeeelekivlvhylevk 118
                             ++n+tf rrcywlL+++le+ivlvhy+e++
  SapurV1A.0050s0650.1.p 134 QDNQTFVRRCYWLLDKSLEHIVLVHYRETQ 163
                             ***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.76142168IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7345163IPR005559CG-1 DNA-binding domain
PfamPF038599.5E-4549161IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.106.3E-4390483IPR013783Immunoglobulin-like fold
PfamPF018332.6E-5394480IPR002909IPT domain
SuperFamilySSF812964.9E-13395481IPR014756Immunoglobulin E-set
SuperFamilySSF484033.11E-16584692IPR020683Ankyrin repeat-containing domain
CDDcd002045.82E-15585689No hitNo description
Gene3DG3DSA:1.25.40.206.2E-15588692IPR020683Ankyrin repeat-containing domain
PfamPF127962.9E-6597659IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.902597662IPR020683Ankyrin repeat-containing domain
SMARTSM002481.1E-5630659IPR002110Ankyrin repeat
PROSITE profilePS5008811.354630662IPR002110Ankyrin repeat
PROSITE profilePS500966.54778804IPR000048IQ motif, EF-hand binding site
SMARTSM0001551793815IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.998794823IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0027816838IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.608817841IPR000048IQ motif, EF-hand binding site
PfamPF006123.5E-4820837IPR000048IQ motif, EF-hand binding site
SMARTSM0001563896918IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.309898926IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 944 aa     Download sequence    Send to blast
MIFFFLTYQV NFLLFYEMES GFSDRLIGSE IHGFHTLRDL DVSNIMEESR TRWLRPNEIH  60
AMLCNYKYFT INVKPVYLPE SGTIVLFDRK MLRNFRKDGH SWKKKKDGKT VKEAHEHLKV  120
GNVERIHVYY AHGQDNQTFV RRCYWLLDKS LEHIVLVHYR ETQELQGSPA TPVNSHSSSV  180
SDQSASRILS EEFDSGAARA YDFSEKDLRS SDNSTVRSHA MRLHELNTLE WDELVTNDPG  240
NSILPGGDKI PCFDQHNHIA VNGSVNDGST PSGYHLSAEI STLGILTESI VRSGNTQLNS  300
PDSVYSQLTC AQVNTDAQRK GSIVLGTSDS LNNLVNDGLR SQDSFGRWMS SILDHSPCSV  360
DDAVLESSIS SGHDSFAPPG IDHHQSSVQE QTFIITDFSP AWAFSNETTK ILVTGYFHEQ  420
YLNLAKSNLF CICGDAFVRA EIVQVGVYSC MLPSHSPGLV NFCLSLDGLE PTSQILNFEY  480
RAPSVHDPVV SSEDKSKWEE FHLQMRLAYL LFSTSKTLDV LSNKLSPTNL KEAKNFTRKT  540
SNVSNSWAYL IKAIEDGEIS VAQAKDGFFE LSLKNTLKEW LSERILEGCK TTGYDAQGLG  600
VIHLCAIIGY TWAVYLFSWS GLSLDFRDKH GWTALHWAAY YGREKMVAAL LSAGAMPNLV  660
TDPTKENPGG CTAADLASAR GYDGLAAYLS EKALVAQFES MIIAGNITGS LQTTATDTVN  720
SENLSEEELY LKDTLAAYRT AADAAARIQV AFREHSLKVR TKAVQLSSPE DEARNIIAAM  780
KIQHAFRNHD SKKKMAAAAR IQHRFRTWKI RRDFLNMRHH AIKIQAVFRG FQVRRQFIKI  840
IWSVGVLEKA VLRWRLKRRG FRGLRVEPVE AVVDQTHESD TEEDFYKLSQ KQAEERVERS  900
VIRVQAMFRS KKAQEEYWRM KLTHKQAKVE YEGLLDSDMN VDR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0050s0650.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009959.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
RefseqXP_011009967.10.0PREDICTED: calmodulin-binding transcription activator 5 isoform X1
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLB9HWX40.0B9HWX4_POPTR; Uncharacterized protein
STRINGPOPTR_0010s15160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]