PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0049s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 172aa MW: 18523.9 Da PI: 5.6952 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96 | 7.1e-30 | 14 | 79 | 5 | 70 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ++ +++h kv+gRdRR+Rl+++caar+F++++eLG ++d++tieWLl+ a+p i + tg++ + SapurV1A.0049s0230.1.p 14 PKPRKDRHVKVNGRDRRIRLPINCAARVFQMTRELGNKTDGETIEWLLRVAEPTIVAVTGNGIGPT 79 5788*********************************************************55554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 23.517 | 17 | 71 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 6.9E-26 | 17 | 78 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MNKASTSKTK VADPKPRKDR HVKVNGRDRR IRLPINCAAR VFQMTRELGN KTDGETIEWL 60 LRVAEPTIVA VTGNGIGPTG ANLRYSQAAV VNTAPPVSYS SDLHPLSSAG LSSPLMDPSV 120 EPIQGLISRN CVVSGDEPLS FTSEFDNLET DFDMDFPVSD MFPSVPGNDH A* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0049s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314294.3 | 2e-93 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 5e-29 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A2K1Z0T1 | 4e-92 | A0A2K1Z0T1_POPTR; Uncharacterized protein | ||||
STRING | XP_002529440.1 | 3e-44 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 2e-31 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0049s0230.1.p |