PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0048s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 362aa    MW: 40145.1 Da    PI: 6.3564
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0048s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.87.9e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd++l  ++++ G+g+W++ ++  g+ R++k+c++rw +yl
  SapurV1A.0048s0210.1.p 14 KGPWTPEEDDKLTTYIQLQGPGNWRSLPKNAGLQRCGKSCRLRWTNYL 61
                            79********************************************97 PP
2Myb_DNA-binding543.9e-1767111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg+++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0048s0210.1.p  67 RGKFSFEEEETIIQLHSILGNR-WSAIAARLP-GRTDNEIKNYWNTH 111
                             89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-25564IPR009057Homeodomain-like
PROSITE profilePS5129416.25961IPR017930Myb domain
SuperFamilySSF466895.24E-3011108IPR009057Homeodomain-like
SMARTSM007171.5E-121363IPR001005SANT/Myb domain
PfamPF002491.6E-141461IPR001005SANT/Myb domain
CDDcd001671.71E-101661No hitNo description
PROSITE profilePS5129425.54762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-2665116IPR009057Homeodomain-like
SMARTSM007176.6E-1766114IPR001005SANT/Myb domain
PfamPF002497.2E-1667111IPR001005SANT/Myb domain
CDDcd001677.79E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGRGPCCDKN GVKKGPWTPE EDDKLTTYIQ LQGPGNWRSL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SFEEEETIIQ LHSILGNRWS AIAARLPGRT DNEIKNYWNT HIRKRLLRNG  120
IDPVTHAHLL DLSSILSSAL CNPSSLISLS TLVGNTQALL DPDILRLSSI LSSMKQENSD  180
LFLQQIQENQ LRNSLLQNHA IPTLSSQPSQ FQNLVDLVPA CISAASTGPF LNQTTPLMPA  240
NVEGFSPNPT STFSCRNSQE SFVPFNEGLV SQPCFYRNST TTTTANPTVP ELEELSGFQS  300
PNNGYRIFST DSVISTRLTS PGPLNSPSTY INSSSTEDDR ECYSSLLKFE IPESWGIDDF  360
L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C7e-30141164105C-Myb DNA-Binding Domain
1msf_C7e-30141164105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0048s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011048473.10.0PREDICTED: transcription factor MYB39-like
TrEMBLB9I6H30.0B9I6H3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s14480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.13e-84myb domain protein 74