PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0046s0400.9.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

BES1

Protein Properties

Length: 559aa MW: 62303.1 Da PI: 5.2952

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0046s0400.9.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	141.5	7.8e-44	73	213	1	136
DUF822 1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaag 83 gg++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGw v +DGtt++ +gs+p +++a+ SapurV1A.0046s0400.9.p 73 GGARRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWDVLPDGTTFPsrsQGSRPVgGTSAAVT 159 6899***************************************************************988889999973333333 PP DUF822 84 ssas..aspesslq.sslkssalaspvesysaspksssfpspssldsislasaasl 136 ss+s +s++++ ++ +s ++ ve ++++ + +p ps ++ ++ +s SapurV1A.0046s0400.9.p 160 SSSShlVSQQTPPAsLRGVSPGYQTSVEYNTCRMRGVFMPNPSPYNLSANT--QSQ 213 33333488888887789999*********************99876554..344 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	4.8E-38	75	210	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
SuperFamily	SSF51445	5.12E-124	259	544	IPR017853	Glycoside hydrolase superfamily
Gene3D	G3DSA:3.20.20.80	4.6E-142	260	545	IPR013781	Glycoside hydrolase, catalytic domain
Pfam	PF01373	8.0E-80	265	545	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-41	296	310	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-41	317	335	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-41	339	360	IPR001554	Glycoside hydrolase, family 14
PROSITE pattern	PS00506	0	343	351	IPR018238	Glycoside hydrolase, family 14, conserved site
PRINTS	PR00750	1.8E-41	432	454	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	1.8E-41	505	524	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 559 aa Download sequence Send to blast
MATDIQKLIG TSEEDDDEEM DMDVKEEDNE ENGGKNTVAQ IMAGVSGGTT SNSSDNQFQH 60 QQQFQEQVTT PSGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN 120 DVIAALAREA GWDVLPDGTT FPSRSQGSRP VGGTSAAVTS SSSHLVSQQT PPASLRGVSP 180 GYQTSVEYNT CRMRGVFMPN PSPYNLSANT QSQIPAVGEG GEQTESDLHI GGSMDTINDK 240 QIADIPPIPK LPERDFAATP FIPVYVMLPL GVINMKCELG DPDGLLKQLK VLKSANVDGI 300 MVDCWWGIVE AHTPQEYNWN GYSRLFQMVR ELKLKLQVVM SFHECGGNVG DDVCIPLPHW 360 VAEIGRNNPD IFFTDREGRR NSECLSWGID KERVLRGRTA VEVYFDYMRS FRAEFDEFFA 420 DGIISMVEVG LGPCGELRYP SFPVKHGWRY PGIGEFQCYD QYLLKSLKKT AEARGHPFWA 480 RGPDNAGFYN SQPPETGFFC EGGDYDGYYG RFFLNWYTRI LVDHGDRVLS LAKLAFEGIQ 540 IAVKVFIGGT RQPVMLLN*

Sequence ? help Back to Top

Protein Sequence Length: 559 aa Download sequence Send to blast

MATDIQKLIG TSEEDDDEEM DMDVKEEDNE ENGGKNTVAQ IMAGVSGGTT SNSSDNQFQH  60
QQQFQEQVTT PSGGARRSRP LEEKERTKLR ERHRRAITAR ILAGLRRHGN YNLRVRADIN  120
DVIAALAREA GWDVLPDGTT FPSRSQGSRP VGGTSAAVTS SSSHLVSQQT PPASLRGVSP  180
GYQTSVEYNT CRMRGVFMPN PSPYNLSANT QSQIPAVGEG GEQTESDLHI GGSMDTINDK  240
QIADIPPIPK LPERDFAATP FIPVYVMLPL GVINMKCELG DPDGLLKQLK VLKSANVDGI  300
MVDCWWGIVE AHTPQEYNWN GYSRLFQMVR ELKLKLQVVM SFHECGGNVG DDVCIPLPHW  360
VAEIGRNNPD IFFTDREGRR NSECLSWGID KERVLRGRTA VEVYFDYMRS FRAEFDEFFA  420
DGIISMVEVG LGPCGELRYP SFPVKHGWRY PGIGEFQCYD QYLLKSLKKT AEARGHPFWA  480
RGPDNAGFYN SQPPETGFFC EGGDYDGYYG RFFLNWYTRI LVDHGDRVLS LAKLAFEGIQ  540
IAVKVFIGGT RQPVMLLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1bfn_A	1e-108	261	551	11	300	BETA-AMYLASE
1q6c_A	1e-108	261	551	11	300	beta-amylase
1q6g_A	1e-108	261	551	11	300	beta-amylase
1uko_A	1e-108	261	551	11	300	Beta-amylase
1uko_B	1e-108	261	551	11	300	Beta-amylase
1uko_C	1e-108	261	551	11	300	Beta-amylase
1uko_D	1e-108	261	551	11	300	Beta-amylase
1ukp_A	1e-108	261	551	11	300	Beta-amylase
1ukp_B	1e-108	261	551	11	300	Beta-amylase
1ukp_C	1e-108	261	551	11	300	Beta-amylase
1ukp_D	1e-108	261	551	11	300	Beta-amylase
1v3i_A	1e-108	261	551	11	300	Beta-amylase
1wdp_A	1e-108	261	551	11	300	Beta-amylase
1wdq_A	1e-108	261	551	11	300	Beta-amylase
1wdr_A	1e-108	261	551	11	300	Beta-amylase
1wds_A	1e-108	261	551	11	300	Beta-amylase
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0046s0400.9.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024450672.1	0.0	beta-amylase 7 isoform X5
Swissprot	O80831	0.0	BAM7_ARATH; Beta-amylase 7
TrEMBL	A0A3N7EJ36	0.0	A0A3N7EJ36_POPTR; Beta-amylase
STRING	POPTR_0002s16070.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45880.1	0.0	beta-amylase 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0046s0400.9.p

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]