PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0046s0160.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 497aa MW: 53394.3 Da PI: 7.1461 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74 | 1.9e-23 | 264 | 319 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D+++WrKYGqK+ +g+++pr+YYrCt+a gCp+ r+a+d++++++tYeg+Hnh+ SapurV1A.0046s0160.1.p 264 SDECQWRKYGQKMANGNPCPRAYYRCTMAvGCPAPS---RCAKDNTILITTYEGNHNHP 319 79***************************9****98...888999*************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.3E-25 | 248 | 321 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.36E-21 | 256 | 321 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.779 | 258 | 321 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-24 | 263 | 320 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-19 | 265 | 319 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 497 aa Download sequence Send to blast |
MDQQGRELVF MHSGDFLRQN PGVSDHLNDS SSGVHTQPTI KEVDFFSTDR NGKSPSEHQE 60 MKINIGSSSL VDSSINTGLN MSTSSSGISK IANGKEPNNN KLSVLRGELG RLHDENMKLR 120 KLLVQTTKSY KDLQAQLLVA MPKQTQGCRV EQKGELNDTP TPVMSAQHLM DHRPSDITLD 180 VNEPSVSDDK TPELVVSPAN IIEKKSQILG KRASIDDGID QTSRSRGSPK LEQEKPPDEQ 240 VPGVVSFRKA RVSVRARSEA PLISDECQWR KYGQKMANGN PCPRAYYRCT MAVGCPAPSR 300 CAKDNTILIT TYEGNHNHPL PPPATAMANT TSAAAAMLLS GSTTSREGIS SSSCFYPCLP 360 MATLSTSASF PTITLDLTQG PNPTMPFLRT PATFPLPLHG CPQLLGNPMY VGPKLPAILS 420 VQLGQRHASV VETVTAAIAS DPYLTTAVVA AAISTFMGTP RIIDGSYNLS VVPGLRGSPH 480 DAGQLDNAHE GDTELN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-15 | 250 | 322 | 1 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0046s0160.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302808.1 | 0.0 | probable WRKY transcription factor 47 | ||||
TrEMBL | B9GTA4 | 0.0 | B9GTA4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s18770.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10439 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01720.1 | 5e-73 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0046s0160.1.p |