PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0045s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 290aa    MW: 32842.9 Da    PI: 6.2787
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0045s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.27e-1627117186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                             +W+++ + +L++a  ++  +l+rg+l++++W++v++++     + ++ +rs +qCk++++ ++k+yk +k +  + + +  s++p+f
  SapurV1A.0045s0480.1.p  27 CWSEEATATLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRSDVQCKNRIDTIKKKYKVEKSHVVSSNGTLASSWPFF 113
                             7****************************************99999**************************99998888889**** PP

                trihelix  83 dqle 86 
                             ++l+
  SapurV1A.0045s0480.1.p 114 ERLD 117
                             **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-2625119No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGDLMESSPV TPSTTPHSRP LPIREDCWSE EATATLVDAW GRRYLELNRG NLRQKDWQDV  60
ADAVNALHGH TKKTHRSDVQ CKNRIDTIKK KYKVEKSHVV SSNGTLASSW PFFERLDDLI  120
GSNFNSSGKK HPFQSPPLAL PLPPSCRRTP VSSTPQPQPP ALAVALPQKR PLSVDDGYFR  180
RNYSAMAAAA AAVESDSEED EDEEFDRGER ESAQEDVEGE GIKRLALAIE RFGEVYERVE  240
SEKLKQMVDL EKQRMKFAKD LEMERMRIFT ETQIQLEKIK KGKRAPEDY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0045s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303549.11e-175trihelix transcription factor ASIL2
TrEMBLB9GW351e-173B9GW35_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11850.11e-174(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-41sequence-specific DNA binding transcription factors