PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0044s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 921aa    MW: 100738 Da    PI: 7.7164
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0044s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18349448198
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F+
  SapurV1A.0044s0150.1.p 349 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLRVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFS 434
                             89**************************555567778***************9989999999***9.******************** PP

                             E-SSSEE..EEEEE- CS
                      B3  84 ldgrsefelvvkvfr 98 
                             + +  e++lv+++++
  SapurV1A.0044s0150.1.p 435 RLE-PEGKLVMGFRK 448
                             766.77777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-30345452IPR015300DNA-binding pseudobarrel domain
CDDcd100172.70E-21347448No hitNo description
SuperFamilySSF1019363.01E-19347448IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.321349450IPR003340B3 DNA binding domain
PfamPF023621.1E-15349448IPR003340B3 DNA binding domain
SMARTSM010195.2E-19349450IPR003340B3 DNA binding domain
PROSITE profilePS5105014.37575625IPR011124Zinc finger, CW-type
PfamPF074961.0E-12580622IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 921 aa     Download sequence    Send to blast
MSSSSSTTAT ATATVTNNNS NNTSCCSSSS TVLSRKCFNS DCTDFKSRKG WRLRSGDFAE  60
LCDRCASAHE EGRFCETFHL NASGWRGCES CGKRVHCGCI VSLQAFTLLD AGGIACMACA  120
RKNFVMTSNP AWPPLFYHSP FPERLKDLSA KSWNQLAGSG PVPWRQAPSL FNSSATQSEL  180
QPRMPYEVDR LNAGERFSAP SLEKRNLEDF SERLINGSPR NHLWDIVENG NAGIIGDEQP  240
QLLSSLREDI SAQQFGITIP YASPRESKGQ IEGSVNPVQP APLPLFAKRF HGTLHKGVDS  300
SVDGQTRNGR PRIDARGKSQ LLPRYWPRFT DEELQQISGN SNSVIKPLFE KMLSASDAGR  360
IGRLVLPKKC AEAYFPPISQ PEGLPLRVQD SKGKEWIFQF RFWPNNNSRM YVLEGVTPCI  420
QNMQLQAGDT VTFSRLEPEG KLVMGFRKAS STSLSDQDNE TSQTGDGVSA NGDADLGPSP  480
WSKVDKSGYI AKEVLEAKSS IKKRKSSTLG SKSKRLRIEN EDMIELKLTW EEAQGLLRPA  540
PDHVPSIVVI EGFEFEEYED APVLGKPTIF AMDDLGHKIQ WVQCEDCLKW RKLPLNVLLP  600
SKWTCSSNTW DSERSSCSVA QELTSEQLEN LLPSCNLVTS KRLKAAKKDI DNVEALGGLD  660
TLANLAILGE DEALLASSQA TTKHPRHRPG CSCIVCIQPP SGKGPKHKQT CTCNVCQTVK  720
RRFKTLMMKR EKKQSEKEAE TTRKQQESSA EKLLDDDPSP SSNAGSASGS PNKKKAVSEG  780
SDDDPNRMKS SASPFKGQID LNIKPEREDE LSPGSDSGGT KRMLQGASER YLRMQRFLSS  840
DGDGIPASVM LQGASERYLR MQRFLSSDGD SIPASNHTVS SGGADEKVGS AVILGGSHQD  900
AGENHPSAFS LITSASTPAT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C1e-643274511125B3 domain-containing transcription repressor VAL1
5yzz_C1e-643274511125B3 domain-containing transcription repressor VAL1
5z00_C1e-643274511125B3 domain-containing transcription repressor VAL1
5z00_G1e-643274511125B3 domain-containing transcription repressor VAL1
5z00_K1e-643274511125B3 domain-containing transcription repressor VAL1
5z00_M1e-643274511125B3 domain-containing transcription repressor VAL1
6j9a_A9e-653274512126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0044s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024437475.10.0B3 domain-containing protein Os07g0563300
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A2K1YFG80.0A0A2K1YFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77383138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-162HSI2-like 1