PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0042s0570.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 476aa MW: 53339.6 Da PI: 8.1526 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.5e-09 | 2 | 29 | 30 | 57 |
HHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakekk 57 + eLA+++gLte+q++ WF+ rR k+k+ SapurV1A.0042s0570.6.p 2 KSELADQIGLTEKQISSWFCHRRLKDKR 29 579***********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 9.26E-7 | 1 | 29 | No hit | No description |
PROSITE profile | PS50071 | 11.726 | 1 | 30 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-9 | 2 | 29 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.98E-7 | 2 | 34 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-6 | 2 | 29 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 5 | 28 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MKSELADQIG LTEKQISSWF CHRRLKDKRL RDEGCTNGRQ DRSSGIIQDR GSGLRQDSCG 60 STKQGDYRNL DPREVESQRP YGQNFHTADL TYDRTSRYTG HDSSIDNISS GSSSSLQDKF 120 VSQREDPYDA ENSKYLAQNE AAMPLIPKGA DSFGYKPSGY LKVKGEIENA AITAVKMQLG 180 RHYKEDGPPL GVEFQPLPPG AFASPSRDPA NGPIYVGDLA RMCSPDVSGV RKQSSLGTRY 240 EVYGTKMSSH DSYTEGANCN PEHSDSHDKK SHHHLEQKPT YNGSNSNAGG NSAMDMPDDL 300 AGETSAYVNK RHYRMSSKHG FEGRRLDSLS THHGPSGRRN SEKTEAWLYD CNNDNPKIVQ 360 RNNYMSKHPH LMRGFGKSLD TEERAPRTIT EKEDKLYGEM KRMKAFHDPV RVRRHPTDES 420 TVAKRFRVDF PQQEYVAKAS FSERHRRTNL TKGSAMERPS SFSEDEAAET SSSAE* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0042s0570.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464501.1 | 0.0 | uncharacterized protein LOC7475016 isoform X1 | ||||
TrEMBL | A0A2K1Z474 | 0.0 | A0A2K1Z474_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s07600.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 2e-68 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0042s0570.6.p |