PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0042s0570.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | HB-other | ||||||||
Protein Properties | Length: 508aa MW: 57316.2 Da PI: 8.104 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 21 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kRt t+ q+++Le+++++++yp++e++ eLA+++gLte+q++ WF+ rR k+k+ SapurV1A.0042s0570.2.p 21 KRTVKTPAQVDALENFYNEHKYPTEEMKSELADQIGLTEKQISSWFCHRRLKDKR 75 8****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-21 | 2 | 75 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.07 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-19 | 18 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-17 | 18 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.46E-18 | 21 | 75 | No hit | No description |
Pfam | PF00046 | 3.4E-17 | 21 | 75 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 51 | 74 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MEESSEVHSV ENRFSPDKNF KRTVKTPAQV DALENFYNEH KYPTEEMKSE LADQIGLTEK 60 QISSWFCHRR LKDKRLRDEG CTNGRQDRSS GIIQDRGSGL RQDSCGSTKQ GDYRNLDPRE 120 VESQRPYGQN FHTADLTYDR TSRYTGHDSS IDNISSGSSS SLQDKFVSQR EDPYDAENSK 180 YLAQNEAAMP LIPKGADSFG YKPSGYLKVK GEIENAAITA VKMQLGRHYK EDGPPLGVEF 240 QPLPPGAFAS PSRDPANGPI YVGDLARMCS PDVSGVRKQS SLGTRYEVYG TKMSSHDSYT 300 EGANCNPEHS DSHDKKSHHH LEQKPTYNGS NSNAGGNSAM DMPDDLAGET SAYVNKRHYR 360 MSSKHGFEGR RLDSLSTHHG PSGRRNSEKT EAWLYDCNND NPKIVQRNNY MSKHPHLMRG 420 FGKSLDTEER APRTITEKED KLYGEMKRMK AFHDPVRVRR HPTDESTVAK RFRVDFPQQE 480 YVAKASFSER HRRTNLTKGL VCHGEAI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0042s0570.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464502.1 | 0.0 | uncharacterized protein LOC7475016 isoform X2 | ||||
TrEMBL | A0A2K1Z474 | 0.0 | A0A2K1Z474_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s07600.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 7e-86 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0042s0570.2.p |