PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0042s0270.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 362aa MW: 40835.6 Da PI: 9.7017 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 100.4 | 1.2e-31 | 61 | 114 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+ kgL ++hvkSHLQ+YR+ SapurV1A.0042s0270.2.p 61 PRLRWTPDLHRCFVQAVERLGGHERATPKLVLQLMNFKGLRIAHVKSHLQMYRS 114 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.776 | 57 | 117 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-30 | 57 | 115 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.6E-14 | 59 | 115 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-22 | 61 | 115 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-8 | 62 | 113 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MRPVSDQISD GLRFDPSGKS SEEGDDESKT KSSGSSSNSI VEESEKASSR GVRPYARSKV 60 PRLRWTPDLH RCFVQAVERL GGHERATPKL VLQLMNFKGL RIAHVKSHLQ MYRSKRIDDQ 120 GQVINGMGDL IGSSDYFSND FWQHSLLPNI DHNHNSNFRC GNVSWSGHGK WITRPSVPDS 180 INIIRGAGFY RSMTEKIHTG EFGSSTRHGT FHAGNNSTFS DQRRKLMQEF QDAEYHKSMY 240 HSESIQSQTR PTMKQPHVVA QLSKRRGEAN ESKSLETKWS FNVEKCNQLA KRKDDDLDLT 300 LSLCTKLKGK EAKRSLSWDE EDVGSNLYLS LSSTSTKESN SVNLSMHSKY PKLTSTLDLT 360 M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 1e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-17 | 62 | 116 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0042s0270.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210342 | 1e-137 | AC210342.1 Populus trichocarpa clone POP091-B06, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003744.1 | 0.0 | PREDICTED: probable transcription factor KAN4 | ||||
TrEMBL | A0A2K1Z4C5 | 0.0 | A0A2K1Z4C5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s07890.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38300.1 | 5e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0042s0270.2.p |