PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0041s0830.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 382aa    MW: 42711.1 Da    PI: 8.9897
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0041s0830.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022143166123
                             EEETTTTEEESSHHHHHHHHHH.T CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                             ++C+ Cg+ F  + +L++H+   H
  SapurV1A.0041s0830.1.p 143 FPCTACGEIFQKPQLLEQHQAIkH 166
                             89******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.598143171IPR007087Zinc finger, C2H2
PROSITE patternPS000280145166IPR007087Zinc finger, C2H2
SuperFamilySSF563993.84E-11168380No hitNo description
Gene3DG3DSA:3.90.228.104.2E-4315380IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MAAKTGSVFN KFLSFFILLL HLGCFNFTAR LDDHQPTKKR KKVSPLAPIS SSQSRLKPHK  60
ALSSSWSYLK SIFSCQITSR TQSQPAAPTL TSARSSQQSI VSMIPPNQTH LSELPPRKRS  120
TGSCEESDIS TDHHFFPLRN DIFPCTACGE IFQKPQLLEQ HQAIKHAVTQ LLDGDSGRNI  180
VDIIFKTGWS CKEKSPEIRR ILKIHNSPKI LSRFEEYREF VKAKAARNSP IKRRDERCVA  240
DGNELLRFYC STFMCDLGLD GGSSICNQQY CSVCGIIKSG FSPKMDGIST LSTSLRAHMA  300
FPEEIEEEFK FMNVKRAMLV CRVVAGRIGG DLEEDIAKQD RRSDSVLGRG GSGIHTRVDE  360
EELLVFNPRA VLPCFVIVYT V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13741KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0041s0830.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035183.10.0PREDICTED: uncharacterized protein LOC105133068
TrEMBLB9GIT80.0B9GIT8_POPTR; C2H2 family protein
STRINGPOPTR_0001s25700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106682936
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-118C2H2 family protein