PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0041s0190.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 646aa MW: 72816.2 Da PI: 6.892

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0041s0190.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.8	3e-112	271	641	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 + L+ cA+av sgd++ a L+++++++sp gd++qRla+yf+++L+arla+++ l++ ++ s++ + ++ l+a++l++ ++P SapurV1A.0041s0190.1.p 271 TMLILCAQAVGSGDQKTAGGKLKQIRQHSSPFGDANQRLAHYFANGLEARLAGTGMLLSRPISQSSA---TAADILKAYELYVTICP 354 57999**********************************************66666655555544...59*********** PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgv 174 + k+++l aN++I + v++++ vHiiDf+i++G+QWp+++ + Rp+gp ++R+Tg++ p++g +e++eetg+rL+++A++++v SapurV1A.0041s0190.1.p 355 FRKMTNLCANRTISRVVDKATSVHIIDFGIGYGFQWPCFIYRQSLRPGGPGKIRVTGIELPQPGfrPSERVEETGRRLKRLADRMKV 441 ***********************************************************9******************* PP GRAS 175 pfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259 pfe+n+ +a+++e++++++L++++ +E+++Vn++++l++l+d++v ++s+rd+vLklvk+++P+++ + + ++ns+ F +rf e SapurV1A.0041s0190.1.p 442 PFEYNA-IAQKWETIQYDDLKIDRdrDEVIIVNCMYRLKNLPDDTVVVNSPRDDVLKLVKRINPDIFLHGVINGSYNSPFFDTRFRE 527 **.7**********9999********************************************************* PP GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346 al +ysa+fd+lea++pre++er + Ere++gr++ nv+aceg++r+er e +++W+ r + GF++vpl +++ k +k + + +++ SapurV1A.0041s0190.1.p 528 ALFHYSAFFDMLEANAPREDQERLMFEREMIGRDAINVIACEGTQRVERPEPYKQWQTRNLRIGFRQVPLHQSIIKRVKNVKHDYHK 614 **********************************************************************************7 PP GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaWr 374 d + v+e+ ++++lgWk++ + ++SaW+ SapurV1A.0041s0190.1.p 615 D-FIVDEDGQWILLGWKGKIVHAISAWK 641 7.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	61.23	243	622	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.0E-109	271	641	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MDPPSYPTNL QAPADNPSLR SASDGDSPLD SETIDCYHAV LKYIHDILME DGLGDKTCML 60 QDSLALQAAE KSLYDVIGEE YPSSSDHLPP CLIHINERQD ENLTPARSVQ SSVTQPFDSP 120 ESMPYGQFNG VMGSASKSLP YSHSIKFSST KNVSDPLELE GEVMGGDIIQ KNGRGCSSIQ 180 TRGRRNHQHD NNGYLEEGRS KKQSSASESL HLELLDDTFL YNIENGGHIP CPLYGNSRGA 240 RSRKFLQSEQ LAAADTRTRK LANETETDLW TMLILCAQAV GSGDQKTAGG KLKQIRQHSS 300 PFGDANQRLA HYFANGLEAR LAGTGMLLSR PISQSSATAA DILKAYELYV TICPFRKMTN 360 LCANRTISRV VDKATSVHII DFGIGYGFQW PCFIYRQSLR PGGPGKIRVT GIELPQPGFR 420 PSERVEETGR RLKRLADRMK VPFEYNAIAQ KWETIQYDDL KIDRDRDEVI IVNCMYRLKN 480 LPDDTVVVNS PRDDVLKLVK RINPDIFLHG VINGSYNSPF FDTRFREALF HYSAFFDMLE 540 ANAPREDQER LMFEREMIGR DAINVIACEG TQRVERPEPY KQWQTRNLRI GFRQVPLHQS 600 IIKRVKNVKH DYHKDFIVDE DGQWILLGWK GKIVHAISAW KPAQE*

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MDPPSYPTNL QAPADNPSLR SASDGDSPLD SETIDCYHAV LKYIHDILME DGLGDKTCML  60
QDSLALQAAE KSLYDVIGEE YPSSSDHLPP CLIHINERQD ENLTPARSVQ SSVTQPFDSP  120
ESMPYGQFNG VMGSASKSLP YSHSIKFSST KNVSDPLELE GEVMGGDIIQ KNGRGCSSIQ  180
TRGRRNHQHD NNGYLEEGRS KKQSSASESL HLELLDDTFL YNIENGGHIP CPLYGNSRGA  240
RSRKFLQSEQ LAAADTRTRK LANETETDLW TMLILCAQAV GSGDQKTAGG KLKQIRQHSS  300
PFGDANQRLA HYFANGLEAR LAGTGMLLSR PISQSSATAA DILKAYELYV TICPFRKMTN  360
LCANRTISRV VDKATSVHII DFGIGYGFQW PCFIYRQSLR PGGPGKIRVT GIELPQPGFR  420
PSERVEETGR RLKRLADRMK VPFEYNAIAQ KWETIQYDDL KIDRDRDEVI IVNCMYRLKN  480
LPDDTVVVNS PRDDVLKLVK RINPDIFLHG VINGSYNSPF FDTRFREALF HYSAFFDMLE  540
ANAPREDQER LMFEREMIGR DAINVIACEG TQRVERPEPY KQWQTRNLRI GFRQVPLHQS  600
IIKRVKNVKH DYHKDFIVDE DGQWILLGWK GKIVHAISAW KPAQE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-45	273	641	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0041s0190.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002299864.2	0.0	scarecrow-like protein 30
Swissprot	Q9XE58	1e-162	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	B9GJL7	0.0	B9GJL7_POPTR; Uncharacterized protein
STRING	POPTR_0001s24880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-162	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	SapurV1A.0041s0190.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]