PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0041s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 794aa    MW: 88830.9 Da    PI: 4.6818
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0041s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.13.6e-1144167901373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+avs++d++ a++lL+++++++s+ gd +qRla++f+++L+arla+s++++ + +++ ++++++ ++ l+a+k+  ++
  SapurV1A.0041s0170.1.p 416 LRTLLILCAQAVSANDFRTANELLKQIRQHSSQFGDGTQRLAHFFANGLEARLAGSGDGTRSFFTSLTSKRTTAADMLKAYKTNIQA 502
                             5789*********************************************************************************** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s + a ++Il+a+e+++++Hi+Df++ +G+QWp L+q+L+  p+gpp+lR+Tg++ p++g   +e++eetg+rLak++e++
  SapurV1A.0041s0170.1.p 503 CPFKKLSIFFAISMILQAAEKATTLHIVDFGVLYGFQWPILIQQLSLLPNGPPKLRLTGIELPQQGfrPAERIEETGRRLAKYCERF 589
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+++a+++e + +e+L+++++E+laV+++ + ++l+de+v+++ +++++Lkl+++++P+++v++  + ++n++ Fl+rf e
  SapurV1A.0041s0170.1.p 590 EVPFEYNPIAAQNWERIPIEDLKINRDEVLAVHCQCRFKNLFDETVEVDCPKNAILKLIREMNPDIFVHTIMNGSYNAPFFLTRFRE 676
                             *************************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++s+lfd+++++lpre+++ri+ E el gr+++nvvaceg+er+er et+++W+ r  +aGFk++pl++k +++ +  l++++ 
  SapurV1A.0041s0170.1.p 677 ALFHFSSLFDMFDSTLPREDQARIMFEGELYGRDAMNVVACEGQERVERPETYKQWQVRTARAGFKTLPLDQKLMTKFRGKLKNHYH 763
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + + ++e+++++++gWk+r +++ S+W
  SapurV1A.0041s0170.1.p 764 KDFVIDEDNDWMLQGWKGRIIYASSCW 790
                             88************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.434390771IPR005202Transcription factor GRAS
PfamPF035141.3E-111416790IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MDHNYTGFSD HYQNDSKFDE MTMPPHSEQY PNIEYGLEFN IPSPDLSFMN LPFDQPDDPD  60
SFGLSLNSSP VGESFVPSMS LSPDGDALDP SSAWSPEAEA SSPSEDSESS DPLLKYISQM  120
LMEENMEDQP HMFHDHFALS STEKSLYDVI GEQYPSSHDS PQSYVDLESP DSIFLASGSN  180
YADTAGNSTS TTSGTFDSAK ENHWVGGDVG GLNPSFSTSP LPDGNHLQSN FQPNVQFTGN  240
PSNVLTNTGD GLMGSSAGEM VQNMFSDAES VLQFKRGLEE ASKFLPSASQ LVIDLETNVV  300
SSRQKEDAPT VVVKGENSER DSSPDGSRGR KNHEREDPDL DEGRRTKQSA VRVDESELSE  360
MFDKVLLWTG GQCCGDDAVQ DGATKKNSQP DEQSNGSSGG KIRAKRQNKK KETVDLRTLL  420
ILCAQAVSAN DFRTANELLK QIRQHSSQFG DGTQRLAHFF ANGLEARLAG SGDGTRSFFT  480
SLTSKRTTAA DMLKAYKTNI QACPFKKLSI FFAISMILQA AEKATTLHIV DFGVLYGFQW  540
PILIQQLSLL PNGPPKLRLT GIELPQQGFR PAERIEETGR RLAKYCERFE VPFEYNPIAA  600
QNWERIPIED LKINRDEVLA VHCQCRFKNL FDETVEVDCP KNAILKLIRE MNPDIFVHTI  660
MNGSYNAPFF LTRFREALFH FSSLFDMFDS TLPREDQARI MFEGELYGRD AMNVVACEGQ  720
ERVERPETYK QWQVRTARAG FKTLPLDQKL MTKFRGKLKN HYHKDFVIDE DNDWMLQGWK  780
GRIIYASSCW VPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-473997921379Protein SCARECROW
5b3h_D2e-473997921379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0041s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2089320.0AC208932.1 Populus trichocarpa clone JGIACSB1081-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035288.10.0PREDICTED: scarecrow-like protein 34
RefseqXP_011035289.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K2C2W00.0A0A2K2C2W0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s24860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]