PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0520.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 464aa    MW: 50646.9 Da    PI: 5.3558
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0520.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.75.5e-532994623167
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lL++cA+av+ gd++ a++lL+++++++sp+gd++qRla+yf+ AL +rla++ +  +  + + +ts    ++ l+a+++++ ++P
  SapurV1A.0040s0520.4.p 299 SLLIQCAQAVAIGDQRTASELLQQIRQHSSPHGDANQRLAHYFADALDTRLAGTATPAFTLFVSPRTS---AADILKAYQVYVRACP 382
                             79***************************************************766666666555554...89************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                             + ++s++ aN++Il+  ++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rL++
  SapurV1A.0040s0520.4.p 383 FKRMSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLER 462
                             ***************************************************************9**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.441271463IPR005202Transcription factor GRAS
PfamPF035141.9E-50299462IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MSDPNPSFNS SNPEPPNDSA SPTSSSSSSS ESYGPSNNVT LKFISDVLLE EDLEGKTCML  60
QDCLALQAAE KSFYDVLGQE YPHSSNQIRS CFDQNFESPG NGFTWRSGVD SSKSYPPGNN  120
LVEKSDWVFD QSDLDFYQAQ ASPVLPLERT LLGPDLHSPV HPFEVLSKGG GDADSFLSGN  180
DYLMASSASN SSNPPDKDDG EHSPNSSRGR KNHQREDSDG LEEERSKKQS ALSPADSELS  240
ELLDEVLLCS VGQNESTSCS LLGNSQNGAA GNEQRKGSNG RTARGKKRGK KGEVVDSSSL  300
LIQCAQAVAI GDQRTASELL QQIRQHSSPH GDANQRLAHY FADALDTRLA GTATPAFTLF  360
VSPRTSAADI LKAYQVYVRA CPFKRMSNFF ANRTILKLEK KATRLHIIDF GILYGFQWPC  420
LIQRLSERPG GPPKLRITGI ELPQPGFRPA ERVEETGRRL ERY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2630346325182Protein SCARECROW
5b3h_A3e-2630346324181Protein SCARECROW
5b3h_D3e-2630346324181Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0520.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042725.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE587e-84SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9HPF30.0B9HPF3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.14e-73SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]