PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0520.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 503aa    MW: 55211 Da    PI: 5.3717
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0520.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS171.56.5e-533385013167
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lL++cA+av+ gd++ a++lL+++++++sp+gd++qRla+yf+ AL +rla++ +  +  + + +ts    ++ l+a+++++ ++P
  SapurV1A.0040s0520.2.p 338 SLLIQCAQAVAIGDQRTASELLQQIRQHSSPHGDANQRLAHYFADALDTRLAGTATPAFTLFVSPRTS---AADILKAYQVYVRACP 421
                             79***************************************************766666666555554...89************** PP

                    GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                             + ++s++ aN++Il+  ++++r+HiiDf+i +G+QWp+L+q L++Rp+gpp+lRiTg++ p++g   +e++eetg+rL++
  SapurV1A.0040s0520.2.p 422 FKRMSNFFANRTILKLEKKATRLHIIDFGILYGFQWPCLIQRLSERPGGPPKLRITGIELPQPGfrPAERVEETGRRLER 501
                             ***************************************************************9**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.441310502IPR005202Transcription factor GRAS
PfamPF035142.2E-50338501IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDTLLQECPN SLNRFMFDHA SVSFSPNRNR FDGYKLNDTM SDPNPSFNSS NPEPPNDSAS  60
PTSSSSSSSE SYGPSNNVTL KFISDVLLEE DLEGKTCMLQ DCLALQAAEK SFYDVLGQEY  120
PHSSNQIRSC FDQNFESPGN GFTWRSGVDS SKSYPPGNNL VEKSDWVFDQ SDLDFYQAQA  180
SPVLPLERTL LGPDLHSPVH PFEVLSKGGG DADSFLSGND YLMASSASNS SNPPDKDDGE  240
HSPNSSRGRK NHQREDSDGL EEERSKKQSA LSPADSELSE LLDEVLLCSV GQNESTSCSL  300
LGNSQNGAAG NEQRKGSNGR TARGKKRGKK GEVVDSSSLL IQCAQAVAIG DQRTASELLQ  360
QIRQHSSPHG DANQRLAHYF ADALDTRLAG TATPAFTLFV SPRTSAADIL KAYQVYVRAC  420
PFKRMSNFFA NRTILKLEKK ATRLHIIDFG ILYGFQWPCL IQRLSERPGG PPKLRITGIE  480
LPQPGFRPAE RVEETGRRLE RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-2634250224181Protein SCARECROW
5b3h_D5e-2634250224181Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0520.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011042725.10.0PREDICTED: scarecrow-like protein 14
SwissprotQ9XE582e-83SCL14_ARATH; Scarecrow-like protein 14
TrEMBLB9HPF30.0B9HPF3_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03850.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.19e-73SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]