PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0040s0500.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 653aa MW: 74077.5 Da PI: 5.8328

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0040s0500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	363.2	3.7e-111	279	648	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 +++ cAea sgd + a+a L+++++++sp gd++qRla+yf+++L+arla+++ l+ +++++s ++ +e l+a++l++ ++P+ SapurV1A.0040s0500.1.p 279 QIILCAEAAGSGDRKTASAKLKQIRQHSSPFGDANQRLAHYFANGLEARLAGTGMLLS--GHVTQNS-STAAEILKAYELYVTICPF 362 7889**********************************************444444..3333333.469************ PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175 k+++l ++I + ++++ vHiiDf+is+G+QWp+++ + Rp+gpp++RiTg++ p++g +e++eetg+rL+++A++++vp SapurV1A.0040s0500.1.p 363 RKMTNLCGSRTIARVADKAASVHIIDFGISYGFQWPCFIYRQSLRPGGPPRIRITGIELPQPGfrPAERIEETGRRLKRLADRMNVP 449 **********************************************************9******************** PP GRAS 176 fefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 fe+++ +a+++e++++e+L++++ +E+++Vn++ +l++l+d++v ++s+rd+vLkl+k+++P+v+ + ++ + n++ F++rf ea SapurV1A.0040s0500.1.p 450 FEYDA-IAQKWETIQYEDLKIDRdrDEVIVVNCMDRLKNLPDDTVVQNSPRDAVLKLIKRINPDVFLHGVRNGSFNAPFFVTRFREA 535 *.7**********9999********************************************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 l +ysa fd+lea++pre++er + Ere++gr+++nvvacegaer+er et+++Wr+r ++GF+++pl +++ k++k++ +++d SapurV1A.0040s0500.1.p 536 LFHYSAYFDMLEANAPREDQERLVFEREMIGRDAMNVVACEGAERIERPETYKQWRMRSLRMGFRQIPLHQSVIKKVKSIKPDYHKD 622 *********************************************************************************77 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 + v+e+ ++l+lgWk++ ++SaW+ SapurV1A.0040s0500.1.p 623 -FIVDEDGQWLLLGWKGKIFHAISAWK 648 .***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	60.863	250	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-108	279	648	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MVIDSMEPPS SPNILQSPTE NPSLGSSSDE DTAYNSETND FSHAVLKYIH DILMEDDLGD 60 KTCMLQDCLA LQAAEKSLYD VLGEESPPSD HFPPCLAQIN ESPDENFSTT RSGQSSVLQS 120 FYSPENVFVI PDVHTEIQSF RQFNGVTGNS DKLLPYSHSE NFSSMRKAPD PPEPEEEVVA 180 DRIQNNGKNY SSNYQYDSND YLEEGRGKKQ HSISDSTHLE LLDDAFLHSI ENGVPIPCPL 240 HDISRIAAYN KFLHDEQLAA SRVRMRTLAS KREADMWTQI ILCAEAAGSG DRKTASAKLK 300 QIRQHSSPFG DANQRLAHYF ANGLEARLAG TGMLLSGHVT QNSSTAAEIL KAYELYVTIC 360 PFRKMTNLCG SRTIARVADK AASVHIIDFG ISYGFQWPCF IYRQSLRPGG PPRIRITGIE 420 LPQPGFRPAE RIEETGRRLK RLADRMNVPF EYDAIAQKWE TIQYEDLKID RDRDEVIVVN 480 CMDRLKNLPD DTVVQNSPRD AVLKLIKRIN PDVFLHGVRN GSFNAPFFVT RFREALFHYS 540 AYFDMLEANA PREDQERLVF EREMIGRDAM NVVACEGAER IERPETYKQW RMRSLRMGFR 600 QIPLHQSVIK KVKSIKPDYH KDFIVDEDGQ WLLLGWKGKI FHAISAWKPV QE*

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MVIDSMEPPS SPNILQSPTE NPSLGSSSDE DTAYNSETND FSHAVLKYIH DILMEDDLGD  60
KTCMLQDCLA LQAAEKSLYD VLGEESPPSD HFPPCLAQIN ESPDENFSTT RSGQSSVLQS  120
FYSPENVFVI PDVHTEIQSF RQFNGVTGNS DKLLPYSHSE NFSSMRKAPD PPEPEEEVVA  180
DRIQNNGKNY SSNYQYDSND YLEEGRGKKQ HSISDSTHLE LLDDAFLHSI ENGVPIPCPL  240
HDISRIAAYN KFLHDEQLAA SRVRMRTLAS KREADMWTQI ILCAEAAGSG DRKTASAKLK  300
QIRQHSSPFG DANQRLAHYF ANGLEARLAG TGMLLSGHVT QNSSTAAEIL KAYELYVTIC  360
PFRKMTNLCG SRTIARVADK AASVHIIDFG ISYGFQWPCF IYRQSLRPGG PPRIRITGIE  420
LPQPGFRPAE RIEETGRRLK RLADRMNVPF EYDAIAQKWE TIQYEDLKID RDRDEVIVVN  480
CMDRLKNLPD DTVVQNSPRD AVLKLIKRIN PDVFLHGVRN GSFNAPFFVT RFREALFHYS  540
AYFDMLEANA PREDQERLVF EREMIGRDAM NVVACEGAER IERPETYKQW RMRSLRMGFR  600
QIPLHQSVIK KVKSIKPDYH KDFIVDEDGQ WLLLGWKGKI FHAISAWKPV QE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	8e-47	283	649	25	379	Protein SCARECROW
5b3h_D	8e-47	283	649	25	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0040s0500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002314169.1	0.0	scarecrow-like protein 30
TrEMBL	B9HPF5	0.0	B9HPF5_POPTR; Uncharacterized protein
STRING	POPTR_0009s03830.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-160	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	SapurV1A.0040s0500.1.p