PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0480.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 800aa    MW: 89725.4 Da    PI: 4.9512
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0480.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS378.39.2e-1164227961373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+a+s++d ++a++lL+++++++sp gd +qRla++f+++L+arl++s+++  + +++ ++++++ ++ l+a+k+  ++
  SapurV1A.0040s0480.1.p 422 LRTLLILCAQAISTDDSRNANELLKQIRQHSSPLGDGTQRLAHFFANGLEARLFGSGNGAPNYFSSLTSKRTTAADMLKAYKTQLQA 508
                             5789******************************************************************9**************** PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k+s   a ++Il a+e+++++Hi+Df++ +G+QWp+L+q+L+  p+gpp+lR+Tg++ p++g   +e++eetg+rLa+++e++
  SapurV1A.0040s0480.1.p 509 CPFKKLSIAFAIKMILHAAEKATTLHIVDFGVLYGFQWPSLIQQLSLLPNGPPKLRLTGIELPQHGfrPSERIEETGRRLANYCERF 595
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+++a+++e++ +e+L+++++E+laVn+ ++ ++llde+v+++ ++d+vLkl+++++P+++v++  + ++n++ Fl+rf e
  SapurV1A.0040s0480.1.p 596 KVPFEYNPITAQNWEKIPIEDLKINRNEVLAVNCLFRFKNLLDETVEVDCPKDAVLKLIRKMNPDIFVHAIVNGSYNAPFFLTRFRE 682
                             *************************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++s+lfd l+++lpre++er++ Ere++g++++nv+aceg+ r+er et+++W+ r  +aGFkp+p++++ +++ k  l+ ++ 
  SapurV1A.0040s0480.1.p 683 ALFHFSSLFDILDSTLPREDQERMMFEREFFGQDAMNVIACEGQGRVERPETYKQWQVRTLRAGFKPLPFDQELMTKFKGKLKSCYH 769
                             **************************************************************************************8 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + + ++e+++++++gWk+r +++ S+W
  SapurV1A.0040s0480.1.p 770 KDFVIDEDNNWMLQGWKGRIIFASSCW 796
                             89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.146396777IPR005202Transcription factor GRAS
PfamPF035143.2E-113422796IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 800 aa     Download sequence    Send to blast
MVMDRNYTGL FDYQNDSKFD ETIVFPISDQ YPETELGLEF NTPSPDLSFI NLPFDPHDSD  60
PDSFRLSFNL NPAGVSSVPS MSLSPDGSGS LDPLTGLNPE AEASSSSEDS DFTDPLLKYI  120
SQMLMEENMK DQPHMFHDHF ALSATEKSLY DALGEQYPPS PNSSQSCPRH DSPNSNISAT  180
GSYCGDNTSN STSTCNCSAT TDFSKDSQRV SGDADVGGSN PSFLRTSLLG DNHFQSNLRP  240
NIQFSANPSN GITNTRDSLM GPSAGEMAQD MFSDMESVLQ FKRGLEEASK FLPSASQLVI  300
DLETNTFSTW KKEETPRVVV KEEKSERDSS PNGSRGRKNH EREDWDLEEG RSNKQSAVHV  360
EEGELSEMFD KVLLWTGGQC CGNDADQEVG CKSLQPDEQS NGSSGGKSRS KRQNKRMETV  420
DLRTLLILCA QAISTDDSRN ANELLKQIRQ HSSPLGDGTQ RLAHFFANGL EARLFGSGNG  480
APNYFSSLTS KRTTAADMLK AYKTQLQACP FKKLSIAFAI KMILHAAEKA TTLHIVDFGV  540
LYGFQWPSLI QQLSLLPNGP PKLRLTGIEL PQHGFRPSER IEETGRRLAN YCERFKVPFE  600
YNPITAQNWE KIPIEDLKIN RNEVLAVNCL FRFKNLLDET VEVDCPKDAV LKLIRKMNPD  660
IFVHAIVNGS YNAPFFLTRF REALFHFSSL FDILDSTLPR EDQERMMFER EFFGQDAMNV  720
IACEGQGRVE RPETYKQWQV RTLRAGFKPL PFDQELMTKF KGKLKSCYHK DFVIDEDNNW  780
MLQGWKGRII FASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-484057981379Protein SCARECROW
5b3h_D5e-484057981379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0480.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314171.30.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2300.0A0A2K1Z230_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03800.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]