PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0040s0470.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 745aa    MW: 83781.3 Da    PI: 4.7946
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0040s0470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.55.9e-1113717411373
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                             l++lL+ cA+avs +d + a++lL+++++++sp gd  qRla++++++L+arl ++++++y al++ +ts    ++ l+a++++  +
  SapurV1A.0040s0470.1.p 371 LRTLLILCAQAVSVNDRRTANELLKQIRQHSSPLGDGSQRLAHCLANGLEARLDGTGTHIYTALSVDKTS---AVDMLKAYQAYISA 454
                             5789**************************************************************9999...9************* PP

                    GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172
                             +P+ k++ + aN+ Il+ +e+++++HiiDf+i +G+QWp+++  L+sRp+gpp+lRiTg++ p+sg   +e+++etg rLak++e+ 
  SapurV1A.0040s0470.1.p 455 CPFKKMAIIFANHSILNVAEKASTLHIIDFGILYGFQWPSFIYRLSSRPGGPPKLRITGIELPQSGfrPAERVQETGCRLAKYCERY 541
                             *****************************************************************9********************* PP

                    GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                             +vpfe+n+ +a++++++++++L+++++E+laVn+ ++ ++llde+v ++s+r++vL+l+  ++P+++v++  + ++n++ F++rf e
  SapurV1A.0040s0470.1.p 542 NVPFEYNA-IAQKWDTIQIDDLKINRNEVLAVNCLFRFKNLLDETVVVNSPRNAVLNLISMTKPDIFVHSIVNGSYNAPFFVTRFRE 627
                             ********.7***************************************************************************** PP

                    GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvks 346
                             al ++salfd+l++++pre++ r k E+e+ gre++nv+aceg+er+er et+++W+ r ++aG+k++pl+  +  + k+ ++  + 
  SapurV1A.0040s0470.1.p 628 ALFHFSALFDMLDTNMPREDKMRLKFEKEFYGREAMNVIACEGSERVERPETYKQWQVRNMRAGMKQLPLDPLVIRKLKCKVKVGYH 714
                             ***********************************************************************************9998 PP

                    GRAS 347 dgyrveeesgslvlgWkdrpLvsvSaW 373
                             + + v+e+++++++gWk+r + + S W
  SapurV1A.0040s0470.1.p 715 EDFVVDEDENWMLQGWKGRIVNASSDW 741
                             99***********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.045345722IPR005202Transcription factor GRAS
PfamPF035142.0E-108371741IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 745 aa     Download sequence    Send to blast
MGSDSRFTEF SGPNKFEDEI VFPVSDQYQN VTNGFKFEDL EFDFVENPLV LPDPDPGNSA  60
LSSITSIDGD SPSDDNDSDN LLKYISQVLM EENMEEKPCM FHDPLALQAA ERSLYDVLGE  120
KNLPYSPHES PSYGDQFLID SPDNSFWSSR DYSSNNSFIS NTASLVDPQW NGESGESKPS  180
FMQMPLSTDF VFQSAANPTS DSAIKPSVGN IVVPNIFSDS DFALQFKRGV EEASKFLPKG  240
NPLVIDLENS SLTPEMNRNA PNVVVKAEKE DREYLPEWLA GKKNHEREDG GFEEERSNKQ  300
CAVSIDECEL SEMFDMLLGV GDGCQPPHCI LNQGEQFESG KALGQNGQTK GTNGSKTRAK  360
RRGDNKEVVD LRTLLILCAQ AVSVNDRRTA NELLKQIRQH SSPLGDGSQR LAHCLANGLE  420
ARLDGTGTHI YTALSVDKTS AVDMLKAYQA YISACPFKKM AIIFANHSIL NVAEKASTLH  480
IIDFGILYGF QWPSFIYRLS SRPGGPPKLR ITGIELPQSG FRPAERVQET GCRLAKYCER  540
YNVPFEYNAI AQKWDTIQID DLKINRNEVL AVNCLFRFKN LLDETVVVNS PRNAVLNLIS  600
MTKPDIFVHS IVNGSYNAPF FVTRFREALF HFSALFDMLD TNMPREDKMR LKFEKEFYGR  660
EAMNVIACEG SERVERPETY KQWQVRNMRA GMKQLPLDPL VIRKLKCKVK VGYHEDFVVD  720
EDENWMLQGW KGRIVNASSD WIPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-473547431379Protein SCARECROW
5b3h_D1e-473547431379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0040s0470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464547.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K1Z2340.0A0A2K1Z234_POPTR; Uncharacterized protein
STRINGPOPTR_0009s03790.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]