PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0040s0170.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 237aa MW: 27060.3 Da PI: 7.6586 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 18 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++tkeq+ Le+++ + r+ps+e++e+++++l +++ ++V++WFqN++a++++ SapurV1A.0040s0170.1.p 18 SRWNPTKEQISMLESFYSQgIRTPSTEMIEQITSRLkaygHIEGKNVFYWFQNHKARQRQ 77 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 110.5 | 9.1e-36 | 17 | 79 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW+Pt+eQi +Le+ y++G+rtP++e i++it++L++yG+ie+kNVfyWFQN+kaR+rqkq SapurV1A.0040s0170.1.p 17 SSRWNPTKEQISMLESFYSQGIRTPSTEMIEQITSRLKAYGHIEGKNVFYWFQNHKARQRQKQ 79 79***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.738 | 13 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.6E-6 | 15 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.69E-13 | 16 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.3E-18 | 18 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-9 | 18 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.01E-7 | 19 | 79 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009942 | Biological Process | longitudinal axis specification | ||||
GO:0010654 | Biological Process | apical cell fate commitment | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDSDDMDVAG SVGAPGSSRW NPTKEQISML ESFYSQGIRT PSTEMIEQIT SRLKAYGHIE 60 GKNVFYWFQN HKARQRQKQK QESMAYINNY LHKVHQPVFA PPCANVVCSP YYPQQSEVMR 120 FRQQHPRMLL PANFKMRPRS EARTYAFNGY EPAVPYEYHN RLTMNKGDRT LVTINHKRCS 180 DQETLPLFPL HPTGSFDGAP AENSIDTPGS SEISTVIEEH SGDCKPFFDF FHGKDS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0040s0170.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982702 | 0.0 | KF982702.1 Populus tomentosa WOX2b (WOX2b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002313442.2 | 1e-160 | WUSCHEL-related homeobox 2 | ||||
TrEMBL | B9HPI9 | 1e-158 | B9HPI9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s03460.1 | 1e-155 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8256 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 2e-55 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0040s0170.1.p |