PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0039s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 366aa    MW: 40165.4 Da    PI: 6.6902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0039s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.23.7e-07141162223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                              C +Cgk F+r  nL+ H+r H
  SapurV1A.0039s0100.1.p 141 FCDICGKGFKRDANLRMHMRAH 162
                             6*******************99 PP
2zf-C2H211.80.00072261277521
                             TTTEEESSHHHHHHHHH CS
                 zf-C2H2   5 dCgksFsrksnLkrHir 21 
                              Cg+sFsrk+ L  H+ 
  SapurV1A.0039s0100.1.p 261 SCGTSFSRKDKLFGHMA 277
                             5**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.2E-6137163No hitNo description
Gene3DG3DSA:3.30.160.605.7E-6140162IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0017140162IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905140167IPR007087Zinc finger, C2H2
PfamPF128740.0048141160No hitNo description
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SMARTSM0035541192225IPR015880Zinc finger, C2H2-like
SMARTSM0035517230252IPR015880Zinc finger, C2H2-like
SMARTSM00355210258282IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MSNPGESTRT PTGFSVPASN TDPRVPLRNL SSVRTRMDSL QQFLSESVNF NTLIRKDQMD  60
MISSEISSAI HVIIINAAAL LSCSSSSSSS SSQPLTPLPP VESTAMKKAQ VLKVENKEEN  120
EKDSELVELD AVELLAEHVH FCDICGKGFK RDANLRMHMR AHGNQFKTLE ALAKPDKGNE  180
TISASLAGKT KFSCPFEGCN RNKKHSKFKP LKSVICVRNH FKRSHCPKMF SCNRCNKKSF  240
SVVTDLKSHL KHCGESRWKC SCGTSFSRKD KLFGHMALFE GHMPAVVDEE EESKAKEVGV  300
GGALAMEEDE EEELGVKGDN LGGDSNDNEV FEGLLDGFGS MEGYSLQDVL GSPFSGIEEF  360
CGFRH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0039s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310559.10.0protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9HFF70.0B9HFF7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s05340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68553150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-74C2H2 family protein